cran: MBA | Projects | Ecosyste.ms: Papers

10.1186/s13059-019-1730-3

Current status and applications of genome-scale metabolic models
Cited by: 406
Author(s): Changdai Gu, Gi Bae Kim, Won Jun Kim, Hyun Uk Kim, Sang Yup Lee
Software Mentions: 7
Published: over 5 years ago

10.3390/jpm11060496

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models
Cited by: 10
Author(s): Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, Mehdi Damaghi, Ali Salehzadeh‐Yazdi
Software Mentions: 7
Published: over 3 years ago

10.1155/2014/649453

Computational Approaches for Microalgal Biofuel Optimization: A Review
Cited by: 21
Author(s): Joseph Koussa, Amphun Chaiboonchoe, Kourosh Salehi‐Ashtiani
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pcbi.1007764

StanDep: Capturing transcriptomic variability improves context-specific metabolic models
Cited by: 19
Author(s): Chintan Joshi, Song‐Min Schinn, Anne Richelle, Isaac Shamie, Eyleen J. O’Rourke, Nathan E. Lewis
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1007099

Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
Cited by: 46
Author(s): Matthew L. Jenior, Thomas J. Moutinho, Bonnie V. Dougherty, Jason A. Papin
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-015-1984-4

Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network
Cited by: 34
Author(s): Maria Pires Pacheco, Elisabeth John, Tony Kaoma, Merja Heinäniemi, Nathalie Nicot, Laurent Vallar, Jean-Luc Bueb, Lasse Sinkkonen, Thomas Sauter
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pcbi.1003424

Fast Reconstruction of Compact Context-Specific Metabolic Network Models
Cited by: 200
Author(s): Nikos Vlassis, Maria Pires Pacheco, Thomas Sauter
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-020-3410-4

FastMM: an efficient toolbox for personalized constraint-based metabolic modeling
Cited by: 6
Author(s): Gong‐Hua Li, Shao‐Xing Dai, Feifei Han, Weihua Li, Jing‐Fei Huang, Wenzhong Xiao
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1005618

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a
Cited by: 20
Author(s): Hua Qing Wu, Mei Cheng, Jin Mei Lai, Hsuan Hui Wu, Meng Chun Chen, Wen Huan Liu, Wu‐Hsiung Wu, Peter Mu Hsin Chang, Chi Ying F. Huang, Ann-Ping Tsou, Ming‐Shi Shiao, Feng Sheng Wang
Software Mentions: 3
Published: about 7 years ago

10.3390/plants9070828

The Influence of a Seedling Recruitment Strategy and a Clonal Architecture on a Spatial Genetic Structure of a Salvia brachyodon (Lamiaceae) Population
Cited by: 3
Author(s): Ivan Radosavljević, Oleg Antonić, Dario Hruševar, Josip Križan, Zlatko Šatović, Doroteja Turković, Zlatko Liber
Software Mentions: 3
Published: about 4 years ago

10.3389/fphys.2015.00410

Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms
Cited by: 22
Author(s): Maria Pires Pacheco, Thomas Pfau, Thomas Sauter
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0131875

Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization
Cited by: 41
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 3
Published: about 9 years ago

10.1186/s12859-020-3440-y

SWIFTCORE: a tool for the context-specific reconstruction of genome-scale metabolic networks
Cited by: 7
Author(s): Mojtaba Tefagh, Stephen Boyd
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-14

MBA: a literature mining system for extracting biomedical abbreviations
Cited by: 18
Author(s): Yun Xu, Zhi-Hao Wang, Yiming Lei, Yuzhong Zhao, Yu Xue
Software Mentions: 2
Published: over 15 years ago

10.1186/s12915-019-0669-x

Studying metabolic flux adaptations in cancer through integrated experimental-computational approaches
Cited by: 18
Author(s): Shoval Lagziel, Won Dong Lee, Tomer Shlomi
Software Mentions: 2
Published: about 5 years ago

10.1186/1752-0509-6-153

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE
Cited by: 233
Author(s): Yuliang Wang, James A. Eddy, Nathan D. Price
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1002011

Blockade of Neuronal α7-nAChR by α-Conotoxin ImI Explained by Computational Scanning and Energy Calculations
Cited by: 70
Author(s): Rilei Yu, David J. Craik, Quentin Kaas
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pcbi.1006867

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions
Cited by: 58
Author(s): Anne Richelle, Austin W. T. Chiang, Chih‐Chung Kuo, Nathan E. Lewis
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13184609

Genome Scale Modeling to Study the Metabolic Competition between Cells in the Tumor Microenvironment
Cited by: 12
Author(s): Itziar Frades, Carles Foguet, Marta Cascante, Marcos J. Araúzo-Bravo
Software Mentions: 2
Published: about 3 years ago

10.1016/j.csbj.2021.06.009

Guided extraction of genome-scale metabolic models for the integration and analysis of omics data
Cited by: 10
Author(s): Andrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.00239

Current Status and Future Prospects of Genome-Scale Metabolic Modeling to Optimize the Use of Mesenchymal Stem Cells in Regenerative Medicine
Cited by: 11
Author(s): Þóra Björg Sigmarsdóttir, Sarah McGarrity, Óttar Rolfsson, James T. Yurkovich, Ólafur E. Sigurjónsson
Software Mentions: 2
Published: over 4 years ago

10.3389/fphys.2013.00237

The evolution of genome-scale models of cancer metabolism
Cited by: 65
Author(s): Nathan E. Lewis, Alyaa M. Abdel-Haleem
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2014.00491

Generalized framework for context-specific metabolic model extraction methods
Cited by: 54
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.08935

Human blindsight is mediated by an intact geniculo-extrastriate pathway
Cited by: 101
Author(s): Sara Ajina, Franco Pestilli, Ariel Rokem, Christopher Kennard, Holly Bridge
Software Mentions: 2
Published: almost 9 years ago

10.3390/toxins7124857

Qualitative and Quantitative Detection of Botulinum Neurotoxins from Complex Matrices: Results of the First International Proficiency Test
Cited by: 23
Author(s): Sylvia Worbs, Uwe Fiebig, Reinhard Zeleny, Heinz Schimmel, Andreas Rummel, Werner Luginbühl, Brigitte G. Dorner
Software Mentions: 1
Published: almost 9 years ago

10.1042/BST20190867

Towards the routine use of <i>in silico</i> screenings for drug discovery using metabolic modelling
Cited by: 12
Author(s): Tamara Jean Rita Bintener, Maria Pires Pacheco, Thomas Sauter
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1005568

On the effects of alternative optima in context-specific metabolic model predictions
Cited by: 16
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0154583

Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method
Cited by: 13
Author(s): Luis Tobalina, Jon Pey, Alberto Rezola, Francisco J. Planes
Software Mentions: 1
Published: over 8 years ago

Ecosyste.ms: Papers

Projects: cran: MBA

Papers Mentioning MBA 32