cran: SuperExactTest | Projects | Ecosyste.ms: Papers

10.1186/s12864-021-07441-4

A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks
Cited by: 2
Author(s): Pedro Gabriel Nachtigall, Luiz Augusto Bovolenta, James G. Patton, Bastian Fromm, Ney Lemke, Danillo Pinhal
Software Mentions: 7
Published: over 3 years ago

10.15252/emmm.201910606

Novel Alzheimer risk genes determine the microglia response to amyloid‐β but not to TAU pathology
Cited by: 149
Author(s): Annerieke Sierksma, Ashley Lu, Renzo Mancuso, Nicola Fattorelli, Nicola Thrupp, Evgenia Salta, Jesus Zoco, David Blum, Luc Buée, Bart De Strooper, Mark Fiers
Software Mentions: 7
Published: over 4 years ago

10.1186/s12859-019-3121-x

A-Lister: a tool for analysis of differentially expressed omics entities across multiple pairwise comparisons
Cited by: 2
Author(s): Stanislav Listopad, Trina M. Norden-Krichmar
Software Mentions: 6
Published: almost 5 years ago

10.3390/cells9051179

Functional Characterisation of the Autophagy ATG12~5/16 Complex in Dictyostelium discoideum
Cited by: 13
Author(s): Malte Karow, Sarah Fischer, Susanne Meßling, Roman Konertz, Jana Riehl, Qiuhong Xiong, Ramesh Rijal, Prerana Wagle, Christoph S. Clemen, Ludwig M. Eichinger
Software Mentions: 6
Published: over 4 years ago

10.1186/s13395-017-0144-8

Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells
Cited by: 29
Author(s): Natalia Pietrosemoli, Sébastien Mella, Siham Yennek, Meryem B. Baghdadi, Hiroshi Sakai, Ramkumar Sambasivan, Francesca Pala, Daniela Di Girolamo, Shahragim Tajbakhsh
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41437-020-00398-2

Sex-specific responses to cold in a very cold-tolerant, northern Drosophila species
Cited by: 12
Author(s): Darren J. Parker, Tapio Envall, Michael G. Ritchie, Maaria Kankare
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-59808-4

Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation
Cited by: 29
Author(s): Ian M. Traniello, Syed Bukhari, Jessica L. Kevill, Amy Cash Ahmed, Adam R. Hamilton, Nicholas L. Naeger, Declan C. Schroeder, Gene E. Robinson
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.ppat.1006699

The yeast form of the fungus Candida albicans promotes persistence in the gut of gnotobiotic mice
Cited by: 70
Author(s): Lena Böhm, Sanda Torsin, Su Hlaing Tint, Marie Therese Eckstein, Tobias Ludwig, J. Christian Pérez
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13100-021-00236-0

Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa
Cited by: 26
Author(s): Guillaume Wos, Rimjhim Roy Choudhury, Filip Kolář, Christian Parisod
Software Mentions: 5
Published: over 3 years ago

10.1093/molbev/msab141

Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution
Cited by: 14
Author(s): Alexander S. T. Papadopulos, Andrew J. Helmstetter, Owen G. Osborne, Aaron A. Comeault, Daniel P. Wood, Edward A. Straw, Laurence Mason, Michael F. Fay, Joe Parker, Luke T. Dunning, Andrew Foote, Rhian J. Smith, Jackie Lighten
Software Mentions: 4
Published: over 3 years ago

10.1007/s13238-019-0648-6

Core transcriptional signatures of phase change in the migratory locust
Cited by: 26
Author(s): Pengcheng Yang, Hou Li, Xianhui Wang, Le Kang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-021-07700-4

Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides
Cited by: 8
Author(s): Lily D. Peck, Reuben W. Nowell, J. Flood, Matthew J. Ryan, Timothy G. Barraclough
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-020-06904-4

Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis
Cited by: 5
Author(s): Bart A. Pannebakker, Nicola Cook, Joost van den Heuvel, Louis van de Zande, David M. Shuker
Software Mentions: 3
Published: about 4 years ago

10.1242/bio.056176

A node-based informed modularity strategy to identify organizational modules in anatomical networks
Cited by: 4
Author(s): Borja Esteve‐Altava
Software Mentions: 3
Published: almost 4 years ago

10.1093/braincomms/fcab053

Activating transcription factor 4-dependent lactate dehydrogenase activation as a protective response to amyloid beta toxicity
Cited by: 8
Author(s): Teresa Niccoli, Fiona Kerr, Inge Snoeren, Daniel K. Fabian, Benjamin Aleyakpo, Dobril Ivanov, Oyinkan Sofola-Adesakin, Adam Cryar, Jennifer Adcott, Janet Thornton, Linda Partridge
Software Mentions: 3
Published: over 3 years ago

10.1093/molbev/msy217

Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes
Cited by: 24
Author(s): Darren J. Parker, Jens Bast, Kirsten M. Jalvingh, Zoé Dumas, Marc Robinson‐Rechavi, Tanja Schwander
Software Mentions: 3
Published: almost 6 years ago

10.15252/msb.20199167

Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states
Cited by: 16
Author(s): Siyu Sun, Anastasia Baryshnikova, Nathan Brandt, David Gresham
Software Mentions: 3
Published: over 4 years ago

10.1093/gbe/evab031

Transposable Element Landscape in <i>Drosophila</i> Populations Selected for Longevity
Cited by: 5
Author(s): Daniel K. Fabian, Handan Melike Dönertaş, Matías Fuentealba, Linda Partridge, Janet M. Thornton
Software Mentions: 3
Published: over 3 years ago

10.1016/j.gpb.2018.10.004

C: Consensus Cancer Driver Gene Caller
Cited by: 2
Author(s): Chenyu Zhu, Chi Zhou, Yun-Qin Chen, Albert Yuh-Jer Shen, Zong-Ming Guo, Zhaoyi Yang, Xiangyun Ye, Shen Qu, Jia Wei, Qi Liu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-4393-z

Exploring the relationship between intron retention and chromatin accessibility in plants
Cited by: 41
Author(s): Fahad Ullah, Michael Hamilton, Anireddy S. N. Reddy, Asa Ben-Hur
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evab038

Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes
Cited by: 9
Author(s): Ying Wang, Liandong Yang
Software Mentions: 2
Published: over 3 years ago

10.1093/molbev/msab119

Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces
Cited by: 26
Author(s): Li Wang, Emily B. Josephs, Kristin M. Lee, Lucas M. Roberts, Rubén Rellán‐Álvarez, Jeffrey Ross‐Ibarra, Matthew B. Hufford
Software Mentions: 2
Published: over 3 years ago

10.1038/srep16923

Efficient Test and Visualization of Multi-Set Intersections
Cited by: 286
Author(s): Minghui Wang, Yang Zhao, Bin Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1093/molbev/msy161

Limited Evidence for Parallel Molecular Adaptations Associated with the Subterranean Niche in Mammals: A Comparative Study of Three Superorders
Cited by: 30
Author(s): Kalina T. J. Davies, Nigel C. Bennett, Chris G. Faulkes, Stephen J. Rossiter
Software Mentions: 2
Published: about 6 years ago

10.1186/s12863-016-0419-9

Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population
Cited by: 22
Author(s): Chad Highfill, G. Adam Reeves, Stuart J. Macdonald
Software Mentions: 2
Published: about 8 years ago

10.3389/fnmol.2016.00144

Integrative Analysis of Sex-Specific microRNA Networks Following Stress in Mouse Nucleus Accumbens
Cited by: 31
Author(s): Madeline L. Pfau, Immanuel Purushothaman, Jian Feng, Sam A. Golden, Hossein Aleyasin, Zachary S. Lorsch, Hannah M. Cates, Meghan E. Flanigan, Caroline Ménard, Mitra Heshmati, Zichen Wang, Avi Ma’ayan, Li Shen, Georgia E. Hodes, Scott J. Russo
Software Mentions: 2
Published: over 7 years ago

10.1093/molbev/msaa242

Sex-Specific Selection Drives the Evolution of Alternative Splicing in Birds
Cited by: 32
Author(s): Thea F Rogers, Daniela H. Palmer, Alison E. Wright
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.64930

SAM homeostasis is regulated by CFIm-mediated splicing of MAT2A
Cited by: 20
Author(s): Anna M. Scarborough, Juliana N. Flaherty, Olga V. Hunter, Kuanqing Liu, Ashwani Kumar, Chao Xing, Benjamin P. Tu, Nicholas K. Conrad
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms20051172

A novel Microproteomic Approach Using Laser Capture Microdissection to Study Cellular Protrusions
Cited by: 11
Author(s): Karine Gousset, Ana Gordon, Shravan Kumar Kannan, Joey Tovar
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.11870

EPRS is a critical regulator of cell proliferation and estrogen signaling in ER+ breast cancer
Cited by: 34
Author(s): Igor Katsyv, Minghui Wang, Won Min Song, Xianxiao Zhou, Yang Zhao, Sun Park, Jun Zhu, Bin Zhang, Hanna Y. Irie
Software Mentions: 1
Published: about 8 years ago

10.1186/s13059-018-1548-4

Evolutionary and developmental dynamics of sex-biased gene expression in common frogs with proto-Y chromosomes
Cited by: 23
Author(s): Wen‐Juan Ma, Paris Veltsos, Roberto Sermier, Darren J. Parker, Nicolas Perrin
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-020-00890-5

Unbiased PCR-free spatio-temporal mapping of the mtDNA mutation spectrum reveals brain region-specific responses to replication instability
Cited by: 6
Author(s): Emilie Kristine Bagge, Noriko Fujimori-Tonou, Mie Kubota-Sakashita, Takaoki Kasahara, Takeshi Kato
Software Mentions: 1
Published: almost 4 years ago

Ecosyste.ms: Papers

Projects: cran: SuperExactTest

Papers Mentioning SuperExactTest 32