cran: taxize | Projects | Ecosyste.ms: Papers

10.7717/peerj.8059

Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media
Cited by: 9
Author(s): Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 24
Published: almost 5 years ago

10.1371/journal.pbio.3001296

Tapping into non-English-language science for the conservation of global biodiversity
Cited by: 79
Author(s): Tatsuya Amano, Violeta Berdejo‐Espinola, Alec P. Christie, Kate Willott, Munemitsu Akasaka, András Báldi, Anna Berthinussen, Sandro Bertolino, Andrew J. Bladon, Min Chen, Chang Yong Choi, Magda Bou Dagher Kharrat, Luís Guilherme de Oliveira, Perla Farhat, Marina Golivets, Nataly Hidalgo Aranzamendi, Kerstin Jantke, Joanna Kajzer‐Bonk, M. Çisel Kemahlı Aytekin, Igor Khorozyan, Kensuke Kito, Ko Konno, Da Li Lin, Nick A. Littlewood, Yang Liu, Yifan Liu, Matthias Claudio Loretto, Valentina Marconi, Philip A. Martin, William H. Morgan, Juan Pablo Narváez-Gómez, Pablo José Negret, Elham Nourani, José Manuel Ochoa Quintero, Nancy Ockendon, Rachel Rui Ying Oh, Silviu O. Petrovan, Ana Cláudia Piovezan-Borges, Ingrid L. Pollet, Danielle Leal Ramos, Ana L. Reboredo Segovia, A. Nayelli Rivera‐Villanueva, Ricardo Rocha, Marie Morgane Rouyer, Katherine A. Sainsbury, Richard Schuster, Dominik Schwab, Çaǧan H. Şekercioǧlu, Hae Min Seo, Gorm E. Shackelford, Yushin Shinoda, Rebecca K. Smith, Shan Dar Tao, Ming-shan Tsai, Elizabeth Tyler, Flóra Vajna, José O. Valdebenito, Svetlana Vozykova, Paweł Waryszak, Veronica Zamora‐Gutiérrez, Rafael Dudeque Zenni, Wenjun Zhou, William J. Sutherland
Software Mentions: 18
Published: about 3 years ago

10.1111/mec.15422

Ecological and evolutionary drivers of haemoplasma infection and bacterial genotype sharing in a Neotropical bat community
Cited by: 21
Author(s): Daniel J. Becker, Kelly A. Speer, Alexis M. Brown, M. Brock Fenton, Alex D. Washburne, Sonia Altizer, Daniel G. Streicker, Raina K. Plowright, Vladimir E. Chizhikov, Nancy B. Simmons, Dmitriy V. Volokhov
Software Mentions: 13
Published: over 4 years ago

10.12688/f1000research.14013.2

Taxa: An R package implementing data standards and methods for taxonomic data
Cited by: 23
Author(s): Zachary Foster, Scott Chamberlain, Niklaus J. Grünwald
Software Mentions: 12
Published: about 6 years ago

10.1371/journal.pcbi.1005404

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
Cited by: 437
Author(s): Zachary Foster, Thomas J. Sharpton, Niklaus J. Grünwald
Software Mentions: 12
Published: over 7 years ago

10.1186/s40168-020-0793-4

Separating the signal from the noise in metagenomic cell-free DNA sequencing
Cited by: 26
Author(s): Philip Burnham, Nardhy Gómez-López, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana Dadhania, John Richard Lee, Manikkam Suthanthiran, Roberto Romero, Iwijn De Vlaminck
Software Mentions: 12
Published: almost 5 years ago

10.3390/genes12020293

G2PMineR: A Genome to Phenome Literature Review Approach
Cited by: 2
Author(s): John M. A. Wojahn, Stephanie J. Galla, Anthony E. Melton, Sven Buerki
Software Mentions: 10
Published: almost 4 years ago

10.1371/journal.pone.0216723

A metadata approach to evaluate the state of ocean knowledge: Strengths, limitations, and application to Mexico
Cited by: 10
Author(s): Juliano Palacios‐Abrantes, Andrés M. Cisneros‐Montemayor, Miguel Á. Cisneros-Mata, Laura Rodríguez, Francisco Arreguı́n-Sánchez, Verónica Aguilar, Santiago Domínguez-Sánchez, Stuart Fulton, Raquel López-Sagástegui, Héctor Reyes‐Bonilla, Rocío Rivera-Campos, Silvia Salas, Nuno Simões, William W. L. Cheung
Software Mentions: 10
Published: over 5 years ago

10.1002/ece3.3163

Genome size in arthropods; different roles of phylogeny, habitat and life history in insects and crustaceans
Cited by: 54
Author(s): Kristian Alfsnes, Hans Petter Leinaas, Dag O. Hessen
Software Mentions: 9
Published: over 7 years ago

10.12688/f1000research.2-191.v2

taxize: taxonomic search and retrieval in R
Cited by: 90
Author(s): Scott Chamberlain, Eduard Szöcs
Software Mentions: 8
Published: about 11 years ago

10.3897/BDJ.6.e23635

The taxlist package: managing plant taxonomic lists in R
Cited by: 5
Author(s): Miguel Álvarez, Federico Luebert
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: over 3 years ago

10.3390/vaccines8020228

Identifying Suspect Bat Reservoirs of Emerging Infections
Cited by: 17
Author(s): Daniel Crowley, Daniel J. Becker, Alex D. Washburne, Raina K. Plowright
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2017.01787

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T–A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae
Cited by: 11
Author(s): Pascal Bartling, Henner Brinkmann, Boyke Bunk, Jörg Overmann, Markus Göker, Jörn Petersen
Software Mentions: 4
Published: about 7 years ago

10.3897/BDJ.7.e28737

Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature
Cited by: 5
Author(s): Gabriel Muñoz, W. Daniel Kissling, E. Emiel van Loon
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-89353-7

Strong variations in urban allergenicity riskscapes due to poor knowledge of tree pollen allergenic potential
Cited by: 15
Author(s): Rita Sousa-Silva, Audrey Smargiassi, Daniel Kneeshaw, Jérôme Dupras, Kate Zinszer, Alain Paquette
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.6060

Influence of taxonomic resolution on mutualistic network properties
Cited by: 12
Author(s): Estelle Renaud, Emmanuelle Baudry, Carmen Bessa‐Gomes
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2021.632264

Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary
Cited by: 5
Author(s): Peggy W. Lehman, Tomofumi Kurobe, Khiet Huynh, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: over 3 years ago

10.3390/genes10060431

Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?
Cited by: 6
Author(s): Laura M Boggs, Melissa Scheible, Gustavo Machado, Kelly A. Meiklejohn
Software Mentions: 2
Published: over 5 years ago

10.1111/1365-2656.12482

<scp>COMADRE</scp> : a global data base of animal demography
Cited by: 169
Author(s): Roberto Salguero‐Gómez, Owen R. Jones, C. Ruth Archer, Christoph Bein, H. Buhr, Claudia Farack, Fränce Gottschalk, Alexander Hartmann, Anne Henning, Gabriel Hoppe, Gesa Römer, Tara Ruoff, Veronika Sommer, Julia Wille, Jakob Voigt, Stefan Zeh, Dirk Vieregg, Yvonne M. Buckley, Judy Che‐Castaldo, David J. Hodgson, Alexander Scheuerlein, Hal Caswell, James W. Vaupel
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-00258-w

Distribution and diversity of enzymes for polysaccharide degradation in fungi
Cited by: 67
Author(s): Renaud Berlemont
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.65066

March Mammal Madness and the power of narrative in science outreach
Cited by: 4
Author(s): Katie Hinde, Carlos Eduardo G. Amorim, Alyson F. Brokaw, Nicole M. Burt, Mary C Casillas, Albert Chen, Tara Chestnut, Patrice K. Connors, Mauna Dasari, Connor Fox Ditelberg, Jeanne Dietrick, Josh Drew, Lara Durgavich, Brian Easterling, Charon Henning, Anne Hilborn, Elinor K. Karlsson, Marc Kissel, Jennifer Kobylecky, Jason Krell, Danielle N Lee, Kate M. Lesciotto, Kristi Lewton, Jessica E. Light, Jeffrey J. Martin, Asia Murphy, William Nickley, Alejandra Núñez‐de la Mora, Olivia Pellicer, Valeria Pellicer, Anali Perry, Stephanie G. Schuttler, Anne C. Stone, Brian P. Tanis, Jesse N. Weber, Melissa A. Wilson, Emma Willcocks, Christopher N. Anderson
Software Mentions: 2
Published: over 3 years ago

10.3897/phytokeys.46.9116

Dataset of Phenology of Mediterranean high-mountain meadows flora (Sierra Nevada, Spain)
Cited by: 8
Author(s): Antonio J. Pérez‐Luque, Cristina Patricia Sánchez-Rojas, Regino Zamora, Ramón Pérez-Pérez, Francisco Javier Bonet
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2018.12.083

Data on the conservation potential of fish and coral populations in aquariums
Cited by: 1
Author(s): Rita da Silva, Dalia Amor Conde
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40709-021-00134-9

Different solutions lead to similar life history traits across the great divides of the amniote tree of life
Cited by: 7
Author(s): Shai Meiri, Gopal Murali, Anna Zimin, Lior Shak, Yuval Itescu, Gabriel Henrique de Oliveira Caetano, Uri Roll
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.04395

Mapping the zoonotic niche of Ebola virus disease in Africa
Cited by: 311
Author(s): David M. Pigott, Nick Golding, Adrian Mylne, Zhi Huang, Alasdair L. Henry, Daniel J. Weiss, Oliver J. Brady, Moritz U. G. Kraemer, David L. Smith, Catherine L. Moyes, Samir Bhatt, Peter W. Gething, Peter Horby, Isaac I. Bogoch, John S. Brownstein, Sumiko R. Mekaru, Andrew J. Tatem, Kamran Khan, Simon I. Hay
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0231436

Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil
Cited by: 13
Author(s): Emma K. Timpano, Melissa Scheible, Kelly A. Meiklejohn
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0125635

The Hemiptera (Insecta) of Canada: Constructing a Reference Library of DNA Barcodes
Cited by: 65
Author(s): Rodger A. Gwiazdowski, Robert G. Foottit, H.E.L. Maw, Paul D. N. Hebert
Software Mentions: 1
Published: over 9 years ago

10.3390/life10040049

Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds
Cited by: 14
Author(s): Jake O. Chandler, Fabian B. Haas, Safina Khan, Laura Bowden, Michael Ignatz, Eugenia M.A. Enfissi, Frances Gawthrop, Alistair Griffiths, Paul D. Fraser, Stefan A. Rensing, Gerhard Leubner‐Metzger
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.120.401312

An Unusual Amino Acid Substitution Within Hummingbird Cytochrome<i>c</i>Oxidase Alters a Key Proton-Conducting Channel
Cited by: 5
Author(s): Cory D. Dunn, Bala Anı Akpınar, Vivek Sharma
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms20102397

Cashew Tree Pollen: An Unknown Source of IgE-Reactive Molecules
Cited by: 5
Author(s): Daniele Danella Figo, Karine De Amicis Lima, Denise Neiva Santos de Aquino, Fabiane Pomiecinski, Gabriele Gadermaier, Peter Briza, Clóvis Eduardo Santos Galvão, Jônatas Bussador do Amaral, Carlo Martins, Fábio Fernandes Morato Castro, Jorge Kalil, Keity Souza Santos
Software Mentions: 1
Published: over 5 years ago

Ecosyste.ms: Papers

Projects: cran: taxize

Papers Mentioning taxize 31