Data

Tools

Indexes

Applications

Experiments

Papers

Papers: 10.1371/journal.pcbi.1005404

https://doi.org/10.1371/journal.pcbi.1005404

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

Cited by: 437
Author(s): Zachary Foster, Thomas J. Sharpton, Niklaus J. Grünwald
Published: over 9 years ago

Software Mentions 12

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: metacoder
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Papers that mentioned: 32
Very Likely Science (100)
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
Very Likely Science (85)
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
Very Likely Science (85)
cran: taxize
Taxonomic Information from Around the Web
Papers that mentioned: 31
Very Likely Science (75)
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
Very Likely Science (65)
pypi: Biology
Biological Analysis
Papers that mentioned: 311
Very Likely Science (90)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
Likely Science (40)