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bioconductor: GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDCPapers that mentioned: 48
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cran: ggtern
An Extension to 'ggplot2', for the Creation of Ternary DiagramsPapers that mentioned: 48
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pypi: webserver
Simple to use CLI for setting up nginx webserver in Docker Swarm and adding websites' configs, proxies and static filesPapers that mentioned: 48
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cran: dartR
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment AnalysisPapers that mentioned: 48
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pypi: msprime
Simulate genealogical trees and genomic sequence data using population genetic modelsPapers that mentioned: 48
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pypi: table
Two-dimensional tables backed by Numpy with named rows and columns.Papers that mentioned: 48
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cran: LPS
Linear Predictor Score, for Binary Inference from Multiple Continuous VariablesPapers that mentioned: 48
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cran: mrbayes
Bayesian Summary Data Models for Mendelian Randomization StudiesPapers that mentioned: 48
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pypi: pymatgen
Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project (https://materialsproject.org).Papers that mentioned: 47
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cran: DPP
Inference of Parameters of Normal Distributions from a Mixture of NormalsPapers that mentioned: 47
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bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsPapers that mentioned: 47
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cran: Observation
Collect and Process Physical Activity Direct Observation DataPapers that mentioned: 47
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cran: scan
Single-Case Data Analyses for Single and Multiple Baseline DesignsPapers that mentioned: 47
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pypi: Mallet
Mallet is a tool for building and maintaining Debian-based virtual servers for web application hosting.Papers that mentioned: 46
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cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)Papers that mentioned: 46
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cran: lcmm
Extended Mixed Models Using Latent Classes and Latent ProcessesPapers that mentioned: 46
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pypi: HDDM
HDDM is a python module that implements Hierarchical Bayesian estimation of Drift Diffusion Models.Papers that mentioned: 46
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cran: simr
Power Analysis for Generalised Linear Mixed Models by SimulationPapers that mentioned: 46
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bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Papers that mentioned: 45
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bioconductor: gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisPapers that mentioned: 45
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cran: heatmaply
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'Papers that mentioned: 45
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cran: zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)Papers that mentioned: 45
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pypi: snakemake
Workflow management system to create reproducible and scalable data analysesPapers that mentioned: 45
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pypi: gee
gee (good enough encryption): the simplest possible encryption tool for single files.Papers that mentioned: 45
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cran: ISAT
Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software OutputPapers that mentioned: 44
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pypi: com
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pypi: DANE
Utils for working with the Distributed Annotation and Enrichment systemPapers that mentioned: 44
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