Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: HDDM

https://packages.ecosyste.ms/registries/pypi.org/packages/HDDM

HDDM is a python module that implements Hierarchical Bayesian estimation of Drift Diffusion Models.
44 versions
Latest release: over 1 year ago
647 downloads last month

Papers Mentioning HDDM 46

10.3389/fpsyt.2021.680811
TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry
Cited by: 55
Author(s): Stefan Frässle, Eduardo A. Aponte, Saskia Bollmann, Kay H. Brodersen, Ting Cao, Olivia K. Harrison, Sarah M. Harrison, Jakob Heinzle, Sandra Iglesias, Lars Kasper, Ekaterina I. Lomakina, Christoph Mathys, Matthias Müller-Schrader, Inês Pereira, Frederike H. Petzschner, Sudhir Raman, Dario Schöbi, Birte Toussaint, Lilian Weber, Yu Yao, Klaas Enno Stephan
Software Mentions: 7
Published: over 3 years ago
10.3389/fpsyg.2020.484737
Comparing Eight Parameter Estimation Methods for the Ratcliff Diffusion Model Using Free Software
Cited by: 5
Author(s): Rainer W. Alexandrowicz, Bartosz Gula
Software Mentions: 7
Published: about 4 years ago
10.3390/jintelligence9020026
Stability and Change in Diffusion Model Parameters over Two Years
Cited by: 4
Author(s): M. Krause, Stefan T. Radev, Andreas Voß, Martin Quintus, Boris Egloff, Cornelia Wrzus
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pcbi.1008955
Computational phenotyping of brain-behavior dynamics underlying approach-avoidance conflict in major depressive disorder
Cited by: 12
Author(s): Mads Lund Pedersen, Maria Ironside, Ken‐ichi Amemori, Callie L. McGrath, Min Su Kang, Ann M. Graybiel, Diego A. Pizzagalli, Michael J. Frank
Software Mentions: 4
Published: over 3 years ago
10.1523/JNEUROSCI.3104-20.2021
A Hierarchy of Functional States in Working Memory
Cited by: 15
Author(s): Paul S. Muhle-Karbe, Norman Myers, Mark G. Stokes
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-98351-8
The critical role of interference control in metaphor comprehension evidenced by the drift–diffusion model
Cited by: 1
Author(s): Hee-Dong Yoon, Minho Shin, Hyeon-Ae Jeon
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-021-90990-1
Contextual prediction errors reorganize naturalistic episodic memories in time
Cited by: 4
Author(s): Fahd Yazin, Moumita Das, Arpan Banerjee, Dipanjan Roy
Software Mentions: 4
Published: over 3 years ago
10.3389/fpsyg.2020.00955
Associative and Identity Words Promote the Speed of Visual Categorization: A Hierarchical Drift Diffusion Account
Cited by: 1
Author(s): Lara Todorova, David A. Neville
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.56938
A flexible framework for simulating and fitting generalized drift-diffusion models
Cited by: 51
Author(s): Maxwell Shinn, Norman H Lam, John D. Murray
Software Mentions: 4
Published: over 4 years ago
10.3389/fnins.2018.00957
COMPASS: An Open-Source, General-Purpose Software Toolkit for Computational Psychiatry
Cited by: 16
Author(s): Ali Yousefi, Angelique C. Paulk, Ishita Basu, Jonathan L. Mirsky, Darin D. Dougherty, Emad N. Eskandar, Uri T. Eden, Alik S. Widge
Software Mentions: 4
Published: almost 6 years ago
10.3389/fnint.2019.00053
Semantic Incongruency Interferes With Endogenous Attention in Cross-Modal Integration of Semantically Congruent Objects
Cited by: 9
Author(s): Julia Spilcke-Liss, Jun Zhu, Sebastian Gluth, Michael L. Spezio, Jan Gläscher
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0140361
Evidence Accumulation and Choice Maintenance Are Dissociated in Human Perceptual Decision Making
Cited by: 9
Author(s): Mads Lund Pedersen, Tor Endestad, Guido Biele
Software Mentions: 3
Published: about 9 years ago
10.7554/eLife.37321
Humans strategically shift decision bias by flexibly adjusting sensory evidence accumulation
Cited by: 65
Author(s): Niels A. Kloosterman, Jan Willem de Gee, Markus Werkle‐Bergner, Ulman Lindenberger, Douglas D. Garrett, Johannes J. Fahrenfort
Software Mentions: 3
Published: almost 6 years ago
10.7554/eLife.23232
Dynamic modulation of decision biases by brainstem arousal systems
Cited by: 206
Author(s): Jan Willem de Gee, Olympia Colizoli, Niels A. Kloosterman, Tomas Knapen, Sander Nieuwenhuis, Tobias H. Donner
Software Mentions: 3
Published: over 7 years ago
10.3389/fpsyg.2020.608287
Systematic Parameter Reviews in Cognitive Modeling: Towards a Robust and Cumulative Characterization of Psychological Processes in the Diffusion Decision Model
Cited by: 5
Author(s): N.-Han Tran, Leendert van Maanen, Andrew Heathcote, Dora Matzke
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpsyg.2021.675558
Comparison of Different Response Time Outlier Exclusion Methods: A Simulation Study
Cited by: 39
Author(s): Alexander Berger, Markus Kiefer
Software Mentions: 2
Published: over 3 years ago
10.3758/s13415-020-00845-x
Learning to Overexert Cognitive Control in a Stroop Task
Cited by: 16
Author(s): Laura Bustamante, Falk Lieder, Sebastian Musslick, Amitai Shenhav, Jonathan D. Cohen
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpsyg.2016.01863
Drifting through Basic Subprocesses of Reading: A Hierarchical Diffusion Model Analysis of Age Effects on Visual Word Recognition
Cited by: 13
Author(s): Eva Froehlich, Johanna Liebig, Johannes C. Ziegler, Mario Braun, Ulman Lindenberger, Hauke R. Heekeren, Arthur Jacobs
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-018-31678-x
Computational and neural signatures of pre and post-sensory expectation bias in inferior temporal cortex
Cited by: 10
Author(s): Kyle Dunovan, Mark E. Wheeler
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-48050-2
Crowdsourcing punishment: Individuals reference group preferences to inform their own punitive decisions
Cited by: 14
Author(s): Jae-Young Son, Apoorva Bhandari, Oriel FeldmanHall
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-52359-3
A quantitative description of the transition between intuitive altruism and rational deliberation in iterated Prisoner’s Dilemma experiments
Cited by: 13
Author(s): Riccardo Gallotti, Jelena Grujić
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0199729
Measures of possible allostatic load in comorbid cocaine and alcohol use disorder: Brain white matter integrity, telomere length, and anti-saccade performance
Cited by: 15
Author(s): Jonika Tannous, Benson Mwangi, Khader M. Hasan, Ponnada A. Narayana, Joel L. Steinberg, Consuelo Walss‐Bass, F. Gerard Moeller, Joy M. Schmitz, Scott D. Lane
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.43499
Confidence predicts speed-accuracy tradeoff for subsequent decisions
Cited by: 53
Author(s): Kobe Desender, Annika Boldt, Tom Verguts, Tobias H. Donner
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.54014
Pupil-linked phasic arousal predicts a reduction of choice bias across species and decision domains
Cited by: 50
Author(s): Jan Willem de Gee, Konstantinos Tsetsos, Lars Schwabe, Anne E Urai, David A. McCormick, Matthew J. McGinley, Tobias H. Donner
Software Mentions: 2
Published: over 4 years ago
10.3389/fninf.2013.00014
HDDM: Hierarchical Bayesian estimation of the Drift-Diffusion Model in Python
Cited by: 533
Author(s): Thomas V. Wiecki, Imri Sofer, Michael J. Frank
Software Mentions: 2
Published: almost 12 years ago
10.3758/s13428-019-01269-3
The validity and consistency of continuous joystick response in perceptual decision-making
Cited by: 3
Author(s): Maciej J Szul, Aline Bompas, Petroc Sumner, Jiaxiang Zhang
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.46331
Choice history biases subsequent evidence accumulation
Cited by: 118
Author(s): Anne E Urai, Jan Willem de Gee, Konstantinos Tsetsos, Tobias H. Donner
Software Mentions: 1
Published: over 5 years ago
10.1523/JNEUROSCI.3194-20.2021
Under Threat, Weaker Evidence Is Required to Reach Undesirable Conclusions
Cited by: 2
Author(s): Laura K. Globig, Kristin Witte, Gloria Feng, Tali Sharot
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.65074
Likelihood approximation networks (LANs) for fast inference of simulation models in cognitive neuroscience
Cited by: 24
Author(s): Alexander Fengler, Lakshmi Narasimhan Govindarajan, Tony Chen, Michael J. Frank
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-79765-2
Qualitative speed-accuracy tradeoff effects that cannot be explained by the diffusion model under the selective influence assumption
Cited by: 12
Author(s): Farshad Rafiei, Dobromir Rahnev
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-82530-8
The dynamics of explore–exploit decisions reveal a signal-to-noise mechanism for random exploration
Cited by: 4
Author(s): Samuel F. Feng, Siyu Wang, Sylvia Zarnescu, Robert Wilson
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0076467
Spatial Frequency Information Modulates Response Inhibition and Decision-Making Processes
Cited by: 20
Author(s): Sara Jahfari, K. Richard Ridderinkhof, H. Steven Scholte
Software Mentions: 1
Published: about 11 years ago
10.3390/brainsci9100271
Mid-Frontal Theta Modulates Response Inhibition and Decision Making Processes in Emotional Contexts
Cited by: 13
Author(s): Siddharth Nayak, Chii-Shyang Kuo, Arthur C. Tsai
Software Mentions: 1
Published: about 5 years ago
10.3390/s20226492
HDDM Hardware Evaluation for Robust Interference Mitigation
Cited by: 7
Author(s): Fabio Garzia, J. Rossouw van der Merwe, Alexander Rügamer, Santiago Urquijo, Wolfgang Felber
Software Mentions: 1
Published: about 4 years ago
10.1038/s41398-020-01118-4
Shifting uncertainty intolerance: methylphenidate and attention-deficit hyperactivity disorder
Cited by: 8
Author(s): Alekhya Mandali, Arjun Sethi, Mara Cercignani, Neil A. Harrison, Valerie Voon
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pcbi.1007089
Evidence accumulation is biased by motivation: A computational account
Cited by: 23
Author(s): Filip Gęsiarz, Donal Cahill, Tali Sharot
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.60874
Alpha oscillations and event-related potentials reflect distinct dynamics of attribute construction and evidence accumulation in dietary decision making
Cited by: 6
Author(s): Azadeh HajiHosseini, Cendri Hutcherson
Software Mentions: 1
Published: over 3 years ago
10.3758/s13421-017-0722-3
Self-prioritization and perceptual matching: The effects of temporal construal
Cited by: 34
Author(s): Marius Golubickis, Johanna K. Falbén, Arash Sahraie, Aleksandar Visokomogilski, William A. Cunningham, Jie Sui, C. Neil Macrae
Software Mentions: 1
Published: over 7 years ago
10.3389/fpsyg.2016.01324
Model Complexity in Diffusion Modeling: Benefits of Making the Model More Parsimonious
Cited by: 74
Author(s): Veronika Lerche, Andreas Voss
Software Mentions: 1
Published: about 8 years ago
10.3389/fpsyg.2017.01077
The Sustained Influence of an Error on Future Decision-Making
Cited by: 13
Author(s): Björn C. Schiffler, Sara Bengtsson, Daniel Lundqvist
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0165297
Doing It Your Way: How Individual Movement Styles Affect Action Prediction
Cited by: 19
Author(s): Atesh Koul, Andrea Cavallo, Caterina Ansuini, Cristina Becchio
Software Mentions: 1
Published: about 8 years ago
10.3758/s13423-020-01742-7
Vision for the blind: visual psychophysics and blinded inference for decision models
Cited by: 11
Author(s): Philip L. Smith, Simon D. Lilburn
Software Mentions: 1
Published: over 4 years ago
10.1177/1747021820925396
Stereotype-based priming without stereotype activation: A tale of two priming tasks
Cited by: 8
Author(s): Dimitra Tsamadi, Johanna K. Falbén, Linn M. Persson, Marius Golubickis, Siobhan Caughey, Betül Şahin, C. Neil Macrae
Software Mentions: 1
Published: over 4 years ago
10.1177/1747021820913016
It’s not always about me: The effects of prior beliefs and stimulus prevalence on self–other prioritisation
Cited by: 11
Author(s): Johanna K. Falbén, Marius Golubickis, Darja Wischerath, Dimitra Tsamadi, Linn M. Persson, Siobhan Caughey, Saga L Svensson, C. Neil Macrae
Software Mentions: 1
Published: over 4 years ago
10.1093/schbul/sbx177
Anomalous Perceptions and Beliefs Are Associated With Shifts Toward Different Types of Prior Knowledge in Perceptual Inference
Cited by: 37
Author(s): Daniel Davies, Christoph Teufel, Paul C. Fletcher
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-017-06116-z
Metacognitive impairments extend perceptual decision making weaknesses in compulsivity
Cited by: 61
Author(s): Tobias U. Hauser, Micah Allen, Geraint Rees, Raymond J. Dolan
Software Mentions: 1
Published: over 7 years ago