Ecosyste.ms: Papers

10.3390/ijms21186853

DNA Methylome Distinguishes Head and Neck Cancer from Potentially Malignant Oral Lesions and Healthy Oral Mucosa
Cited by: 7
Author(s): Nina Milutin Gašperov, Ivan Sabol, Ksenija Božinović, Emil Dediol, Marinka Mravak‐Stipetić, Danilo Licastro, Simeone Dal Monego, Magdalena Grce
Software Mentions: 5
Published: almost 4 years ago

10.3390/cancers13123014

Upper Aerodigestive Tract Squamous Cell Carcinomas Show Distinct Overall DNA Methylation Profiles and Different Molecular Mechanisms behind WNT Signaling Disruption
Cited by: 6
Author(s): Sheila Coelho Soares-Lima, Hisham Mehanna, Diego Camuzi, Paulo Thiago de Souza-Santos, Tatiana de Almeida Simão, Pedro Nicolau-Neto, Monique de Souza Almeida Lopes, Cyrille Cuenin, Fazlur Rahman Talukdar, Nikolaos Batis, Izabella Costa, Fernando Luiz Dias, Davide Degli Esposti, Mariana Boroni, Zdenko Herceg, Luís Felipe Ribeiro Pinto
Software Mentions: 5
Published: over 3 years ago

10.1186/s13148-020-00888-4

Alternative methylation of intron motifs is associated with cancer-related gene expression in both canine mammary tumor and human breast cancer
Cited by: 13
Author(s): A-Reum Nam, Kanghoon Lee, Hyeon-Ji Hwang, Johannes J. Schabort, Jaehoon An, Sungho Won, Je‐Yoel Cho
Software Mentions: 5
Published: about 4 years ago

10.3389/fgene.2020.578345

Integration of Online Omics-Data Resources for Cancer Research
Cited by: 43
Author(s): Tonmoy Das, Geoffroy Andrieux, Musaddeque Ahmed, Sajib Chakraborty
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2020.574853

CXCL12 and IL7R as Novel Therapeutic Targets for Liver Hepatocellular Carcinoma Are Correlated With Somatic Mutations and the Tumor Immunological Microenvironment
Cited by: 5
Author(s): Kui He, Shuai Liu, Yong Xia, Jianguo Xu, Fei Liu, Jing Xiao, Yong Li, Qi Ding, Ligong Lu, Guoan Xiang, Meixiao Zhan
Software Mentions: 4
Published: almost 4 years ago

10.3390/cancers12113079

Comprehensive Analysis of DNA Methylation and Prediction of Response to NeoadjuvantTherapy in Locally Advanced Rectal Cancer
Cited by: 12
Author(s): Luísa Matos do Canto, Mateus Camargo Barros-Filho, Cláudia Aparecida Rainho, Diogo Marinho, Bruna Elisa Catin Kupper, Maria D. Begnami, Cristovam Scapulatempo‐Neto, Birgitte Mayland Havelund, Jan Lindebjerg, Fábio Albuquerque Marchi, Jan Baumbach, Samuel Aguiar, Sílvia Regina Rogatto
Software Mentions: 3
Published: almost 4 years ago

10.1038/s12276-021-00612-z

Epigenetic dysregulation of immune-related pathways in cancer: bioinformatics tools and visualization
Cited by: 5
Author(s): Anders Berglund, Ryan M. Putney, Imène Hamaidi, Sungjune Kim
Software Mentions: 3
Published: over 3 years ago

10.1155/2020/9235101

Identification of Key Differentially Expressed Transcription Factors in Glioblastoma
Cited by: 8
Author(s): Gang Qin, Beiquan Hu, Xianfeng Li, Rongjie Li, Youshi Meng, Yimei Wang, Donghua Zou, Feng Wang
Software Mentions: 3
Published: over 4 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13072-019-0316-3

The SMART App: an interactive web application for comprehensive DNA methylation analysis and visualization
Cited by: 107
Author(s): Yin Li, Di Ge
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.7125

A tropomyosin receptor kinase family protein, NTRK2 is a potential predictive biomarker for lung adenocarcinoma
Cited by: 10
Author(s): Xiang Wang, Zhijie Xu, Xi Chen, Xinxin Ren, Jie Wei, Shengqian Zhou, Xue Yang, Shuangshuang Zeng, Long Qian, Geting Wu, Zhicheng Gong, Yuanliang Yan
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22168691

TNFα and Immune Checkpoint Inhibition: Friend or Foe for Lung Cancer?
Cited by: 16
Author(s): Thomas Benoot, Elisa Piccioni, Kirsten De Ridder, Cleo Goyvaerts
Software Mentions: 2
Published: about 3 years ago

10.1186/s13148-019-0788-9

Comprehensive longitudinal study of epigenetic mutations in aging
Cited by: 20
Author(s): Yunzhang Wang, Robert Karlsson, Juulia Jylhävä, Åsa K. Hedman, Catarina Almqvist, Ida Karlsson, Nancy L. Pedersen, Malin Almgren, Sara Hägg
Software Mentions: 2
Published: almost 5 years ago

10.7150/jca.35641

LAT, HOXD3 and NFE2L3 identified as novel DNA methylation-driven genes and prognostic markers in human clear cell renal cell carcinoma by integrative bioinformatics approaches
Cited by: 25
Author(s): Jie Wang, Zhao Hu, Huiyue Dong, Ling Zhu, Shuiliang Wang, Ping Wang, Qun Ren, Honglin Zhu, Junqiu Chen, Zhijie Lin, Yuanhang Cheng, Benjiang Qian, Yi Zhang, Ruxue Jia, Weizheng Wu, Jun Lü, Ming Jen Tan
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11121976

RASSF10 Is a TGFβ-Target That Regulates ASPP2 and E-Cadherin Expression and Acts as Tumor Suppressor That Is Epigenetically Downregulated in Advanced Cancer
Cited by: 8
Author(s): Antje Richter, Miriam M. Küster, Michelle L. Woods, Sara K. Walesch, Mira Y. Gökyildirim, Marcus Krueger, Reinhard Dammann
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13072-015-0014-8

Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer
Cited by: 169
Author(s): Anna Díez-Villanueva, Izaskun Mallona, Miguel A. Peinado
Software Mentions: 1
Published: about 9 years ago

10.1155/2013/739716

Chinese Herbal Medicine and Depression: The Research Evidence
Cited by: 36
Author(s): Lee Butler, Karen Pilkington
Software Mentions: 1
Published: over 11 years ago

10.3389/fcell.2021.633927

ALKBH1-8 and FTO: Potential Therapeutic Targets and Prognostic Biomarkers in Lung Adenocarcinoma Pathogenesis
Cited by: 12
Author(s): Geting Wu, Yuanliang Yan, Yuan Cai, Bi Peng, Juanni Li, Jinzhou Huang, Zhijie Xu, Jianhua Zhou
Software Mentions: 1
Published: over 3 years ago

10.3390/ht7040033

From Single Level Analysis to Multi-Omics Integrative Approaches: A Powerful Strategy towards the Precision Oncology
Cited by: 44
Author(s): Maria Eugenia Gallo Cantafio, Katia Grillone, Daniele Caracciolo, Francesca Scionti, Mariamena Arbitrio, Vito Barbieri, Licia Pensabene, Pietro Hiram Guzzi, Maria Teresa Di Martino
Software Mentions: 1
Published: almost 6 years ago

10.7150/jca.40955

CD148 Serves as a Prognostic Marker of Gastric Cancer and Hinders Tumor Progression by Dephosphorylating EGFR
Cited by: 7
Author(s): Yiting Sun, Li Song, Wenbin Yu, Cheng Chen, Teng Li, Lanbo Li, Di Zhang, Zhao Zhi, Jing Gao, Wang Xiao, Duan-Bo Shi, Lian Liu
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.16717

The increased expression and aberrant methylation of SHC1 in non–small cell lung cancer: Integrative analysis of clinical and bioinformatics databases
Cited by: 5
Author(s): Yicheng Liang, Yixiong Lei, Minjun Du, Mei Liang, Zixu Liu, Xingkai Li, Yushun Gao
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm8030355

Multiomics Analysis Reveals that GLS and GLS2 Differentially Modulate the Clinical Outcomes of Cancer
Cited by: 55
Author(s): Subbroto Kumar Saha, Saiful Islam, M. Abdullah-Al-Wadud, Saiful Islam, Farman Ali, Kyoung Sik Park
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm8040513

Systematic Multiomics Analysis of Alterations in C1QBP mRNA Expression and Relevance for Clinical Outcomes in Cancers
Cited by: 19
Author(s): Subbroto Kumar Saha, Kyung Eun Kim, S. M. Riazul Islam, Ssang-Goo Cho, Minchan Gil
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm8101526

NT5E/CD73 as Correlative Factor of Patient Survival and Natural Killer Cell Infiltration in Glioblastoma
Cited by: 32
Author(s): Jiao Wang, Sandro Matosevic
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep46101

Novel miRNA-mRNA interactions conserved in essential cancer pathways
Cited by: 37
Author(s): Eduardo Andrés-León, Ildefonso Cases, Sergio Alonso, Ana M. Rojas
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-81851-y

Abnormal promoter DNA hypermethylation of the integrin, nidogen, and dystroglycan genes in breast cancer
Cited by: 12
Author(s): В. В. Стрельников, Ekaterina Kuznetsova, А. С. Танас, В. В. Руденко, А.И. Калинкин, Elena Poddubskaya, Т. В. Кекеева, Galina G. Chesnokova, И Д Троценко, Sergey Larin, Sergey I. Kutsev, D. V. Zaletaev, Marina V. Nemtsova, О. А. Симонова
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-020-01708-6

TMPRSS2, a SARS-CoV-2 internalization protease is downregulated in head and neck cancer patients
Cited by: 23
Author(s): Andrea Sacconi, Sara Donzelli, Claudio Pulito, Stefano Ferrero, Francesca Spinella, Andrea Morrone, Marta Rigoni, Fulvia Pimpinelli, Fabrizio Ensoli, Giuseppe Sanguineti, Raul Pellini, Nishant Agrawal, Evgeny Izumchenko, Gennaro Ciliberto, Aldo Bruno Giannì, Paola Muti, Sabrina Strano, Giovanni Blandino
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41388-020-1195-6

RASSF10 is frequently epigenetically inactivated in kidney cancer and its knockout promotes neoplasia in cancer prone mice
Cited by: 11
Author(s): Antje Richter, Michelle L. Woods, Miriam M. Küster, Sara K. Walesch, Thomas Braun, Thomas Boettger, Reinhard Dammann
Software Mentions: 1
Published: over 4 years ago

10.1038/s41389-020-00280-0

Breast tumor cells promotes the horizontal propagation of EMT, stemness, and metastasis by transferring the MAP17 protein between subsets of neoplastic cells
Cited by: 10
Author(s): José Manuel García-Heredia, Daniel Otero-Albiol, Manuel Pérez, Elena Pérez-Castejón, Sandra Muñoz-Galván, Amancio Carnero
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21124307

Characterization of HLA-G Regulation and HLA Expression in Breast Cancer and Malignant Melanoma Cell Lines upon IFN-γ Stimulation and Inhibition of DNA Methylation
Cited by: 6
Author(s): Nanna K. Jørgensen, Abid Sayed, Helene Bjerregaard Jeppesen, Gry Persson, Iben Weisdorf, Tina Funck, Thomas Vauvert F. Hviid
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.7373

Involvement of calprotectin (S100A8/A9) in molecular pathways associated with HNSCC
Cited by: 30
Author(s): Ali Khammanivong, Brent S. Sorenson, Kristin Ross, Erin B. Dickerson, Rifat Hasina, Mark W. Lingen, Mark C. Herzberg
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.202519

The novel roles of virus infection-associated gene CDKN1A in chemoresistance and immune infiltration of glioblastoma
Cited by: 11
Author(s): Kuan Hu, Juanni Li, Geting Wu, Lei Zhou, Xiang Wang, Yuanliang Yan, Zhijie Xu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12967-019-1852-0

ZCCHC13-mediated induction of human liver cancer is associated with the modulation of DNA methylation and the AKT/ERK signaling pathway
Cited by: 14
Author(s): Zhiming Li, Zhi Li, Linjun Wang, Long Chen, Zaozao Zheng, Xuan Zhuang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08406-2

SOX14 hypermethylation as a tumour biomarker in cervical cancer
Cited by: 11
Author(s): Jing Zhao, Hongxin Cao, Zhang Wen-fan, Yongjuan Fan, Shujuan Shi, Rong Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines8050116

Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and its Relation to Epigenomic Subtypes and HER2 Overexpression
Cited by: 9
Author(s): О. А. Симонова, Ekaterina Kuznetsova, А. С. Танас, В. В. Руденко, Elena Poddubskaya, Т. В. Кекеева, И Д Троценко, Sergey Larin, С. И. Куцев, D. V. Zaletaev, Marina V. Nemtsova, В. В. Стрельников
Software Mentions: 1
Published: over 4 years ago

10.1186/s13058-017-0856-z

BRCA promoter methylation in sporadic versus BRCA germline mutation-related breast cancers
Cited by: 31
Author(s): Shoko Vos, Cathy B. Moelans, Paul J. van Diest
Software Mentions: 1
Published: over 7 years ago

10.1186/s40880-019-0376-6

<i>PD</i> -<i>L1</i> and <i>PD</i> -<i>L2</i> expression correlated genes in non-small-cell lung cancer
Cited by: 57
Author(s): Trine Vilsbøll Larsen, Dianna Hussmann, Anders Lade Nielsen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0171265

Recurrent rearrangements of the Myb/SANT-like DNA-binding domain containing 3 gene (MSANTD3) in salivary gland acinic cell carcinoma
Cited by: 35
Author(s): Nicholas Barasch, Xue Gong, Kevin Kwei, Sushama Varma, Jewison Biscocho, Kunbin Qu, Nan Xiao, Joseph S. Lipsick, Robert J. Pelham, Robert B. West, Jonathan R. Pollack
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0186977

Reduced expression of IQGAP2 and higher expression of IQGAP3 correlates with poor prognosis in cancers
Cited by: 35
Author(s): Dinesh Kumar, Md. Khurshidul Hassan, Niharika Pattnaik, Nachiketa Mohapatra, Manjusha Dixit
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0222298

Function of low ADARB1 expression in lung adenocarcinoma
Cited by: 13
Author(s): Xiang Wang, Zhijie Xu, Xinxin Ren, Xi Chen, Jie Wei, Wei Lin, Zhi Li, Chunlin Ou, Zhicheng Gong, Yuanliang Yan
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers11060797

The Metallophosphoesterase-Domain-Containing Protein 2 (MPPED2) Gene Acts as Tumor Suppressor in Breast Cancer
Cited by: 10
Author(s): Simona Pellecchia, Romina Sepe, Antonella Federico, Mariella Cuomo, Sara Carmela Credendino, Pasquale Pisapia, Claudio Bellevicine, Pedro Nicolau-Neto, Mariana Severo Ramundo, Elvira Crescenzi, Gabriella De Vita, Luigi Terracciano, Lorenzo Chiariotti, Alfredo Fusco, Pierlorenzo Pallante
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12020374

Autotaxin and Breast Cancer: Towards Overcoming Treatment Barriers and Sequelae
Cited by: 25
Author(s): Matthew G.K. Benesch, Xiaoyun Tang, David N. Brindley
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13184607

USP44 Promoter Methylation in Plasma Cell-Free DNA in Prostate Cancer
Cited by: 5
Author(s): Dora Londra, Sophia Mastoraki, Evangelos Bournakis, Martha Zavridou, A. Thanos, Θεόδωρος Ράμπιας, Evi Lianidou
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers12123528

Epigenetic Inactivation of the Tumor Suppressor IRX1 Occurs Frequently in Lung Adenocarcinoma and Its Silencing Is Associated with Impaired Prognosis
Cited by: 12
Author(s): Miriam M. Küster, Marc A. Schneider, Antje Richter, Sarah Richtmann, Hauke Winter, Mark Kriegsmann, Soni Savai Pullamsetti, Thorsten Stiewe, Thomas Muley, Reinhard Dammann
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41419-020-02877-0

LncRNA CDKN2B-AS1/miR-141/cyclin D network regulates tumor progression and metastasis of renal cell carcinoma
Cited by: 38
Author(s): Pritha Dasgupta, Priyanka Kulkarni, Shahana Majid, Yutaka Hashimoto, Marisa Shiina, Varahram Shahryari, Nadeem S. Bhat, Laura Tabatabai, Soichiro Yamamura, Sharanjot Saini, Yuichiro Tanaka, Rajvir Dahiya
Software Mentions: 1
Published: about 4 years ago

10.1186/s13148-019-0774-2

Epigenetic therapy of novel tumour suppressor ZAR1 and its cancer biomarker function
Cited by: 12
Author(s): Verena Deutschmeyer, Janina Breuer, Sara K. Walesch, Anna M. Sokòl, Johannes Graumann, Marek Bartkuhn, Thomas Boettger, Oliver Roßbach, Antje Richter
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13148-017-0429-0

TFF1 hypermethylation and decreased expression in esophageal squamous cell carcinoma and histologically normal tumor surrounding esophageal cells
Cited by: 15
Author(s): Isabela Martins Gonzaga, Sheila Coelho Soares Lima, Marina Chianello Nicolau, Pedro Nicolau-Neto, Nathalia Meireles Da Costa, Tatiana de Almeida Simão, Héctor Hernandez-Vargas, Zdenko Herceg, Luís Felipe Ribeiro Pinto
Software Mentions: 1
Published: almost 7 years ago