Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: scan
https://packages.ecosyste.ms/registries/pypi.org/packages/scan
Scan tool
1 version
Latest release: over 1 year ago
Papers Mentioning scan 47
10.1371/journal.pntd.0004236
Distribution and Potential Indicators of Hospitalized Cases of Neurocysticercosis and Epilepsy in Ecuador from 1996 to 2008Cited by: 14
Author(s): Lenin Ron, Marco Coral-Almeida, Sarah Gabriël, Washington Benítez‐Ortiz, Claude Saegerman, Pierre Dorny, Dirk Berkvens, Emmanuel Abatih
Software Mentions: 7
Published: about 9 years ago
10.3389/fpsyg.2021.672301
Differential Effects of Ethical Education, Physical Hatha Yoga, and Mantra Meditation on Well-Being and Stress in Healthy Participants—An Experimental Single-Case StudyCited by: 11
Author(s): Karin Matko, Peter Sedlmeier, Holger C. Bringmann
Software Mentions: 6
Published: over 3 years ago
10.18632/oncotarget.20977
Selecting lncRNAs in gastric cancer cells for directed therapy with bioactive peptides and chemotherapy drugsCited by: 7
Author(s): Wenyan Han, Rui Xiao, Chuanling Zhang, Qimuge Suyila, Xian Li, Xiulan Su
Software Mentions: 4
Published: about 7 years ago
10.1186/s12859-021-04136-1
scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropyCited by: 3
Author(s): Zechuan Chen, Zeruo Yang, Xi Yuan, Xiaoming Zhang, Pei Hao
Software Mentions: 4
Published: over 3 years ago
10.1186/2044-5040-1-23
Novel mutations in NEB cause abnormal nebulin expression and markedly impaired muscle force generation in severe nemaline myopathyCited by: 51
Author(s): Michael W. Lawlor, Coen A.C. Ottenheijm, Vilma-Lotta Lehtokari, Kiyomi Cho, Katarina Pelin, Carina Wallgren‐Pettersson, Henk Granzier, Alan H. Beggs
Software Mentions: 4
Published: over 13 years ago
10.7554/eLife.48779
An arbitrary-spectrum spatial visual stimulator for vision researchCited by: 43
Author(s): Katrin Franke, André Maia Chagas, Zhijian Zhao, Maxime Zimmermann, Philipp Bartel, Yongrong Qiu, Klaudia P. Szatko, Tom Baden, Thomas Euler
Software Mentions: 4
Published: about 5 years ago
10.1186/1756-0500-5-252
Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complexCited by: 38
Author(s): Ezio Portis, Davide Scaglione, Alberto Acquadro, Giovanni Mauromicale, Rosario Paolo Mauro, Steven J. Knapp, Sergio Lanteri
Software Mentions: 3
Published: over 12 years ago
10.1107/S0907444913027157
An estimated 5% of new protein structures solved today represent a new Pfam familyCited by: 12
Author(s): Jaina Mistry, Edda Kloppmann, Burkhard Rost, Marco Punta
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pgen.1008387
AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvationCited by: 19
Author(s): Jianhui Li, Michal Breker, Morven Graham, Maya Schuldiner, Mark Hochstrasser
Software Mentions: 3
Published: about 5 years ago
10.1016/j.cell.2011.11.065
Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible CancerCited by: 292
Author(s): Elizabeth P. Murchison, Ole Schulz-Trieglaff, Zemin Ning, Ludmil B. Alexandrov, Markus Bauer, Beiyuan Fu, Matthew M. Hims, Zhihao Ding, Sergii Ivakhno, Caitlin M. Stewart, Bee Ling Ng, Wendy S. W. Wong, Bronwen Aken, Simon White, Amber E. Alsop, Jennifer Becq, Graham R. Bignell, R. Keira Cheetham, William Cheng, Thomas R. Connor, A.J. Cox, Zhiping Feng, Yong Gu, Russell Grocock, Simon R. Harris, Irina Khrebtukova, Zoya Kingsbury, Mark Kowarsky, Alexandre Kreiss, Shujun Luo, John Marshall, David J. McBride, Lisa Murray, Anne-Maree Pearse, Keiran Raine, Isabelle Rasolonjatovo, Richard J. Shaw, Philip Tedder, Carolyn Tregidgo, Albert J. Vilella, David C. Wedge, Gregory M. Woods, Niall Gormley, Sean Humphray, Gary P. Schroth, Geoffrey Smith, Kevin P. Hall, Stephen M. J. Searle, Nigel P. Carter, Anthony T. Papenfuss, P. Andrew Futreal, Peter J. Campbell, Fengtang Yang, David Bentley, Dirk Evers, Michael R. Stratton
Software Mentions: 3
Published: almost 13 years ago
10.3390/v8070196
Molecular and Genetic Characterization of HIV-1 Tat Exon-1 Gene from Cameroon Shows Conserved Tat HLA-Binding Epitopes: Functional ImplicationsCited by: 8
Author(s): Georges Této, Julius Y. Fonsah, Claude Tayou Tagny, Dora Mbanya, Emilienne Nchindap, Léopoldine Kenmogne, Joseph Fokam, Dora M. Njamnshi, Charles Kouanfack, Alfred K. Njamnshi, Georgette D. Kanmogne
Software Mentions: 3
Published: over 8 years ago
10.1111/pbi.12691
Reduction of heterozygosity (ROH) as a method to detect mosaic structural variationCited by: 9
Author(s): Fabio Marroni, Davide Scaglione, Sara Pinosio, Alberto Policriti, Mara Miculan, Gabriele Di Gaspero, Michèle Morgante
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2020.567471
RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery ApproachCited by: 4
Author(s): Hermenegildo Taboada-Castro, Jaime A Castro-Mondragón, Alejandro Aguilar-Vera, Alfredo Hernández-Alvarez, Jacques van Helden, Sergio Encarnación‐Guevara
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0142581
Skill-Specific Changes in Somatosensory Nogo Potentials in Baseball PlayersCited by: 27
Author(s): Koya Yamashiro, Daisuke Sato, Hideaki Onishi, Kazuhiro Sugawara, Shinpei Nakazawa, Hiroto Shimojo, Kosuke Akatsuka, Hiroki Nakata, Atsuo Maruyama
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0052274
Exercise Training Prevents TNF-α Induced Loss of Force in the Diaphragm of MiceCited by: 38
Author(s): Norman Mangner, Axel Linke, Andreas Oberbach, Yvonne Kullnick, Stephan Gielen, Monica Sandri, Robert Hoellriegel, Yasuharu Matsumoto, Gerhard Schuler, Volker Adams
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0016829
Stay Tuned: What Is Special About Not Shifting Attention?Cited by: 7
Author(s): Durk Talsma, Jonne J. Sikkens, Jan Theeuwes
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0019959
Molecular Characterizations of a Novel Putative DNA-Binding Protein LvDBP23 in Marine Shrimp L. vannamei Tissues and Molting StagesCited by: 5
Author(s): Yanisa Laoong-u-thai, Baoping Zhao, Amornrat Phongdara, Jinzeng Yang
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0043634
The Therapeutic Profile of Rolipram, PDE Target and Mechanism of Action as a Neuroprotectant following Spinal Cord InjuryCited by: 60
Author(s): Sandra Marie Schaal, Maneesh Sen Garg, Mousumi Ghosh, Lilie Lovera, María Isabel Sánchez López, Monal Patel, Jack Louro, Samik Patel, Luis M. Tuesta, Wai Man Chan, Damienniel da Pearse
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0026865
Ghrelin and Its Analogues, BIM-28131 and BIM-28125, Improve Body Weight and Regulate the Expression of MuRF-1 and MAFbx in a Rat Heart Failure ModelCited by: 43
Author(s): Sandra Palus, Robert Schur, Yoshihiro J. Akashi, Barbara Bockmeyer, Rakesh Datta, Heather Halem, Jesse Z. Dong, Michael D. Culler, Volker Adams, Stefan D. Anker, Jochen Springer
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0107467
The Crosstalk between IL-22 Signaling and miR-197 in Human KeratinocytesCited by: 43
Author(s): Galya Lerman, Michal Sharon, Raya Leibowitz-Amit, Yechezkel Sidi, Dror Avni
Software Mentions: 2
Published: about 10 years ago
10.3389/fbioe.2021.690409
Efficient and Consistent Orthotopic Osteosarcoma Model by Cell Sheet Transplantation in the Nude Mice for Drug TestingCited by: 3
Author(s): Hongwei Wu, Zhengxi He, Xianan Li, Xuezheng Xu, Wei Zhong, Jie Bu, Gang Huang
Software Mentions: 2
Published: about 3 years ago
10.3389/fncel.2017.00217
Differential SLC1A2 Promoter Methylation in Bipolar Disorder With or Without AddictionCited by: 24
Author(s): Yun Fang Jia, Yuri Choi, Jennifer Ayers-Ringler, Joanna M. Biernacka, Jennifer R. Geske, Daniel R. Lindberg, Susan L. McElroy, Mark A. Frye, Doo Sup Choi, Marin Veldić
Software Mentions: 2
Published: over 7 years ago
10.3389/fimmu.2019.00212
Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues TropismCited by: 26
Author(s): Yesid Cuesta-Astroz, Alberto Santos, Guilherme Oliveira, Lars Juhl Jensen
Software Mentions: 2
Published: almost 6 years ago
10.3389/fnins.2020.00369
Analyzing Brain Connectivity in the Mutual Regulation of Emotion–Movement Using Bidirectional Granger CausalityCited by: 10
Author(s): Ting Li, Guoqi Li, Tao Xue, Jinhua Zhang
Software Mentions: 2
Published: over 4 years ago
10.3389/fpsyg.2017.01012
Inhibition of Return Is Modulated by Negative Stimuli: Evidence from Subliminal PerceptionCited by: 6
Author(s): Faming Pan, WU Xiao-gang, Li Zhang, Yuhong Ou
Software Mentions: 2
Published: over 7 years ago
10.1186/s13059-014-0565-1
Conserved syntenic clusters of protein coding genes are missing in birdsCited by: 102
Author(s): Peter V. Lovell, Morgan Wirthlin, Larry J. Wilhelm, Patrick Minx, Nathan H. Lazar, Lucia Carbone, Wesley C. Warren, Claudio V. Mello
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.ppat.1009596
Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of viral RNACited by: 26
Author(s): Peter Simmonds, Azim Ansari
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.ppat.1009950
Herpes simplex virus 1 evades cellular antiviral response by inducing microRNA-24, which attenuates STING synthesisCited by: 15
Author(s): Nikhil Sharma, Chenyao Wang, Patricia M. Kessler, Ganes C. Sen
Software Mentions: 2
Published: about 3 years ago
10.1038/sdata.2016.9
First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acidsCited by: 51
Author(s): M. Ropo, Markus Schneider, Carsten Baldauf, Volker Blüm
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep16323
Large-scale production of bioactive recombinant human acidic fibroblast growth factor in transgenic silkworm cocoonsCited by: 25
Author(s): Feng Wang, Riyuan Wang, Yuancheng Wang, Ping Zhao, Qingyou Xia
Software Mentions: 2
Published: about 9 years ago
10.1038/s41598-021-81852-x
Modality-specific improvements in sensory processing among baseball playersCited by: 9
Author(s): Koya Yamashiro, Yoshitake Yamazaki, Kanako Siiya, Koyuki Ikarashi, Yoshifumi Baba, Naofumi Otsuru, Hideaki Onishi, Daisuke Sato
Software Mentions: 2
Published: almost 4 years ago
10.22038/ijbms.2019.36189.8622
Filtered Kombucha tea ameliorates the leaky gut syndrome in young and old mice model of colitis.Cited by: 4
Author(s): Nafiseh Pakravan, Fatemeh Kkermanian, Elaheh Mahmoudi
Software Mentions: 2
Published: about 5 years ago
10.3390/ijerph120100816
Cluster of Human Infections with Avian Influenza A (H7N9) Cases: A Temporal and Spatial AnalysisCited by: 30
Author(s): Yi Zhang, Zhixiong Shen, Caiyun Ma, Chengsheng Jiang, Cindy Feng, Nivedita Shankar, Peng Yang, Wenjie Sun, Quanyi Wang
Software Mentions: 2
Published: almost 10 years ago
10.3390/ijerph17041413
Space-Time Clustering Characteristics of Tuberculosis in Khyber Pakhtunkhwa Province, Pakistan, 2015–2019Cited by: 5
Author(s): Sami Ullah, Hanita Daud, Sarat C. Dass, Hadi Fanaee-T, Husnul Kausarian, Alamgir Khalil
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13395-020-00229-2
Expression of MuRF1 or MuRF2 is essential for the induction of skeletal muscle atrophy and dysfunction in a murine pulmonary hypertension modelCited by: 19
Author(s): Thanh Hung Nguyen, T. Scott Bowen, Antje Augstein, Antje Schauer, Alexander Gasch, Axel Linke, Siegfried Labeit, Volker Adams
Software Mentions: 2
Published: over 4 years ago
10.1002/ajmg.b.32239
Allelic association, DNA resequencing and copy number variation at the metabotropic glutamate receptor <i>GRM7</i> gene locus in bipolar disorderCited by: 30
Author(s): Radhika Kandaswamy, Andrew McQuillin, David Curtis, Hugh Gurling
Software Mentions: 2
Published: over 10 years ago
10.3390/ani10101850
Analysis of lncRNA Expression Profile during the Formation of Male Germ Cells in ChickensCited by: 9
Author(s): Wen Gao, Chen Zhang, Kai Jin, Yani Zhang
Software Mentions: 2
Published: about 4 years ago
10.1186/1471-2350-12-25
Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban populationCited by: 24
Author(s): Bonnie R. Joubert, David M. Reif, Stephen W. Edwards, Kevin Leiner, Edward Hudgens, Peter Egeghy, Jane Gallagher, Elaine Cohen Hubal
Software Mentions: 2
Published: almost 14 years ago
10.3762/bjnano.8.167
Air–water interface of submerged superhydrophobic surfaces imaged by atomic force microscopyCited by: 13
Author(s): Markus Moosmann, Thomas Schimmel, Wilhelm Barthlott, Matthias Mail
Software Mentions: 2
Published: over 7 years ago
10.1186/1475-2867-13-116
Expression pattern of the apoptosis-stimulating protein of p53 family in p53+ human breast cancer cell linesCited by: 12
Author(s): Changsong Wang, Chunfang Gao, Yanping Chen, Jia Yin, Ping Wang, Xuexia Lv
Software Mentions: 2
Published: almost 12 years ago
10.3390/md18080407
Proteo-Transcriptomic Analysis Identifies Potential Novel Toxins Secreted by the Predatory, Prey-Piercing Ribbon Worm Amphiporus lactifloreusCited by: 12
Author(s): Björn M. von Reumont, Tim Lüddecke, Thomas Timm, Günter Lochnit, Andreas Vilcinskas, Jörn von Döhren, Maria A. Nilsson
Software Mentions: 2
Published: over 4 years ago
10.14202/vetworld.2018.620-626
Evaluation of wet cupping therapy on the arterial and venous blood parameters in healthy Arabian horsesCited by: 3
Author(s): Turke Shawaf, Wael El-Deeb, Jamal Hussen, Mahmoud Hendi, Shahab Al-Bulushi
Software Mentions: 2
Published: over 6 years ago
10.1111/pbi.12535
The <i> <scp>A</scp> rabidopsis </i> transcriptional regulator <scp>DPB</scp> 3‐1 enhances heat stress tolerance without growth retardation in riceCited by: 51
Author(s): Hikaru Sato, Daisuke Todaka, Madoka Kudo, Junya Mizoi, Satoshi Kidokoro, Yu Zhao, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki
Software Mentions: 2
Published: almost 9 years ago
10.3390/plants10010042
Analgesic and Anti-Inflammatory Effects of Aucklandia lappa Root Extracts on Acetic Acid-Induced Writhing in Mice and Monosodium Iodoacetate-Induced Osteoarthritis in RatsCited by: 6
Author(s): Hee-Geun Jo, Geon-Yeong Lee, Chae Yun Baek, Ho Sueb Song, Donghun Lee
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pgen.1001042
The Fitness Landscapes of cis-Acting Binding Sites in Different Promoter and Environmental ContextsCited by: 34
Author(s): Ryan K. Shultzaberger, Daniel S. Malashock, Jack F. Kirsch, Michael B. Eisen
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pgen.1004282
The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human CellsCited by: 126
Author(s): Franck Picard, Jean‐Charles Cadoret, Benjamin Audit, A. Arnéodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie‐Noëlle Prioleau
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0042520
Functional and Structural Comparison of Pyrrolnitrin- and Iprodione-Induced Modifications in the Class III Histidine-Kinase Bos1 of Botrytis cinereaCited by: 57
Author(s): Sabine Fillinger, Sakhr Ajouz, Philippe C. Nicot, Pierre Leroux, Marc Bardin
Software Mentions: 2
Published: over 12 years ago