Ecosyste.ms: Papers

10.1371/journal.pntd.0004236

Distribution and Potential Indicators of Hospitalized Cases of Neurocysticercosis and Epilepsy in Ecuador from 1996 to 2008
Cited by: 14
Author(s): Lenin Ron, Marco Coral-Almeida, Sarah Gabriël, Washington Benítez‐Ortiz, Claude Saegerman, Pierre Dorny, Dirk Berkvens, Emmanuel Abatih
Software Mentions: 7
Published: almost 9 years ago

10.3389/fpsyg.2021.672301

Differential Effects of Ethical Education, Physical Hatha Yoga, and Mantra Meditation on Well-Being and Stress in Healthy Participants—An Experimental Single-Case Study
Cited by: 11
Author(s): Karin Matko, Peter Sedlmeier, Holger C. Bringmann
Software Mentions: 6
Published: over 3 years ago

10.18632/oncotarget.20977

Selecting lncRNAs in gastric cancer cells for directed therapy with bioactive peptides and chemotherapy drugs
Cited by: 7
Author(s): Wenyan Han, Rui Xiao, Chuanling Zhang, Qimuge Suyila, Xian Li, Xiulan Su
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-021-04136-1

scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropy
Cited by: 3
Author(s): Zechuan Chen, Zeruo Yang, Xi Yuan, Xiaoming Zhang, Pei Hao
Software Mentions: 4
Published: over 3 years ago

10.1186/2044-5040-1-23

Novel mutations in NEB cause abnormal nebulin expression and markedly impaired muscle force generation in severe nemaline myopathy
Cited by: 51
Author(s): Michael W. Lawlor, Coen A.C. Ottenheijm, Vilma-Lotta Lehtokari, Kiyomi Cho, Katarina Pelin, Carina Wallgren‐Pettersson, Henk Granzier, Alan H. Beggs
Software Mentions: 4
Published: over 13 years ago

10.7554/eLife.48779

An arbitrary-spectrum spatial visual stimulator for vision research
Cited by: 43
Author(s): Katrin Franke, André Maia Chagas, Zhijian Zhao, Maxime Zimmermann, Philipp Bartel, Yongrong Qiu, Klaudia P. Szatko, Tom Baden, Thomas Euler
Software Mentions: 4
Published: about 5 years ago

10.1186/1756-0500-5-252

Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex
Cited by: 38
Author(s): Ezio Portis, Davide Scaglione, Alberto Acquadro, Giovanni Mauromicale, Rosario Paolo Mauro, Steven J. Knapp, Sergio Lanteri
Software Mentions: 3
Published: over 12 years ago

10.1107/S0907444913027157

An estimated 5% of new protein structures solved today represent a new Pfam family
Cited by: 12
Author(s): Jaina Mistry, Edda Kloppmann, Burkhard Rost, Marco Punta
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pgen.1008387

AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation
Cited by: 19
Author(s): Jianhui Li, Michal Breker, Morven Graham, Maya Schuldiner, Mark Hochstrasser
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.cell.2011.11.065

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer
Cited by: 292
Author(s): Elizabeth P. Murchison, Ole Schulz-Trieglaff, Zemin Ning, Ludmil B. Alexandrov, Markus Bauer, Beiyuan Fu, Matthew M. Hims, Zhihao Ding, Sergii Ivakhno, Caitlin M. Stewart, Bee Ling Ng, Wendy S. W. Wong, Bronwen Aken, Simon White, Amber E. Alsop, Jennifer Becq, Graham R. Bignell, R. Keira Cheetham, William Cheng, Thomas R. Connor, A.J. Cox, Zhiping Feng, Yong Gu, Russell Grocock, Simon R. Harris, Irina Khrebtukova, Zoya Kingsbury, Mark Kowarsky, Alexandre Kreiss, Shujun Luo, John Marshall, David J. McBride, Lisa Murray, Anne-Maree Pearse, Keiran Raine, Isabelle Rasolonjatovo, Richard J. Shaw, Philip Tedder, Carolyn Tregidgo, Albert J. Vilella, David C. Wedge, Gregory M. Woods, Niall Gormley, Sean Humphray, Gary P. Schroth, Geoffrey Smith, Kevin P. Hall, Stephen M. J. Searle, Nigel P. Carter, Anthony T. Papenfuss, P. Andrew Futreal, Peter J. Campbell, Fengtang Yang, David Bentley, Dirk Evers, Michael R. Stratton
Software Mentions: 3
Published: almost 13 years ago

10.3390/v8070196

Molecular and Genetic Characterization of HIV-1 Tat Exon-1 Gene from Cameroon Shows Conserved Tat HLA-Binding Epitopes: Functional Implications
Cited by: 8
Author(s): Georges Této, Julius Y. Fonsah, Claude Tayou Tagny, Dora Mbanya, Emilienne Nchindap, Léopoldine Kenmogne, Joseph Fokam, Dora M. Njamnshi, Charles Kouanfack, Alfred K. Njamnshi, Georgette D. Kanmogne
Software Mentions: 3
Published: over 8 years ago

10.1111/pbi.12691

Reduction of heterozygosity (ROH) as a method to detect mosaic structural variation
Cited by: 9
Author(s): Fabio Marroni, Davide Scaglione, Sara Pinosio, Alberto Policriti, Mara Miculan, Gabriele Di Gaspero, Michèle Morgante
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.567471

RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach
Cited by: 4
Author(s): Hermenegildo Taboada-Castro, Jaime A Castro-Mondragón, Alejandro Aguilar-Vera, Alfredo Hernández-Alvarez, Jacques van Helden, Sergio Encarnación‐Guevara
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0142581

Skill-Specific Changes in Somatosensory Nogo Potentials in Baseball Players
Cited by: 27
Author(s): Koya Yamashiro, Daisuke Sato, Hideaki Onishi, Kazuhiro Sugawara, Shinpei Nakazawa, Hiroto Shimojo, Kosuke Akatsuka, Hiroki Nakata, Atsuo Maruyama
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0052274

Exercise Training Prevents TNF-α Induced Loss of Force in the Diaphragm of Mice
Cited by: 38
Author(s): Norman Mangner, Axel Linke, Andreas Oberbach, Yvonne Kullnick, Stephan Gielen, Monica Sandri, Robert Hoellriegel, Yasuharu Matsumoto, Gerhard Schuler, Volker Adams
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0016829

Stay Tuned: What Is Special About Not Shifting Attention?
Cited by: 7
Author(s): Durk Talsma, Jonne J. Sikkens, Jan Theeuwes
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0019959

Molecular Characterizations of a Novel Putative DNA-Binding Protein LvDBP23 in Marine Shrimp L. vannamei Tissues and Molting Stages
Cited by: 5
Author(s): Yanisa Laoong-u-thai, Baoping Zhao, Amornrat Phongdara, Jinzeng Yang
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0043634

The Therapeutic Profile of Rolipram, PDE Target and Mechanism of Action as a Neuroprotectant following Spinal Cord Injury
Cited by: 60
Author(s): Sandra Marie Schaal, Maneesh Sen Garg, Mousumi Ghosh, Lilie Lovera, María Isabel Sánchez López, Monal Patel, Jack Louro, Samik Patel, Luis M. Tuesta, Wai Man Chan, Damienniel da Pearse
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0026865

Ghrelin and Its Analogues, BIM-28131 and BIM-28125, Improve Body Weight and Regulate the Expression of MuRF-1 and MAFbx in a Rat Heart Failure Model
Cited by: 43
Author(s): Sandra Palus, Robert Schur, Yoshihiro J. Akashi, Barbara Bockmeyer, Rakesh Datta, Heather Halem, Jesse Z. Dong, Michael D. Culler, Volker Adams, Stefan D. Anker, Jochen Springer
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0107467

The Crosstalk between IL-22 Signaling and miR-197 in Human Keratinocytes
Cited by: 43
Author(s): Galya Lerman, Michal Sharon, Raya Leibowitz-Amit, Yechezkel Sidi, Dror Avni
Software Mentions: 2
Published: about 10 years ago

10.3389/fbioe.2021.690409

Efficient and Consistent Orthotopic Osteosarcoma Model by Cell Sheet Transplantation in the Nude Mice for Drug Testing
Cited by: 3
Author(s): Hongwei Wu, Zhengxi He, Xianan Li, Xuezheng Xu, Wei Zhong, Jie Bu, Gang Huang
Software Mentions: 2
Published: about 3 years ago

10.3389/fncel.2017.00217

Differential SLC1A2 Promoter Methylation in Bipolar Disorder With or Without Addiction
Cited by: 24
Author(s): Yun Fang Jia, Yuri Choi, Jennifer Ayers-Ringler, Joanna M. Biernacka, Jennifer R. Geske, Daniel R. Lindberg, Susan L. McElroy, Mark A. Frye, Doo Sup Choi, Marin Veldić
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2019.00212

Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism
Cited by: 26
Author(s): Yesid Cuesta-Astroz, Alberto Santos, Guilherme Oliveira, Lars Juhl Jensen
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2020.00369

Analyzing Brain Connectivity in the Mutual Regulation of Emotion–Movement Using Bidirectional Granger Causality
Cited by: 10
Author(s): Ting Li, Guoqi Li, Tao Xue, Jinhua Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fpsyg.2017.01012

Inhibition of Return Is Modulated by Negative Stimuli: Evidence from Subliminal Perception
Cited by: 6
Author(s): Faming Pan, WU Xiao-gang, Li Zhang, Yuhong Ou
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-014-0565-1

Conserved syntenic clusters of protein coding genes are missing in birds
Cited by: 102
Author(s): Peter V. Lovell, Morgan Wirthlin, Larry J. Wilhelm, Patrick Minx, Nathan H. Lazar, Lucia Carbone, Wesley C. Warren, Claudio V. Mello
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.ppat.1009596

Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of viral RNA
Cited by: 26
Author(s): Peter Simmonds, Azim Ansari
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009950

Herpes simplex virus 1 evades cellular antiviral response by inducing microRNA-24, which attenuates STING synthesis
Cited by: 15
Author(s): Nikhil Sharma, Chenyao Wang, Patricia M. Kessler, Ganes C. Sen
Software Mentions: 2
Published: about 3 years ago

10.1038/sdata.2016.9

First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids
Cited by: 51
Author(s): M. Ropo, Markus Schneider, Carsten Baldauf, Volker Blüm
Software Mentions: 2
Published: over 8 years ago

10.1038/srep16323

Large-scale production of bioactive recombinant human acidic fibroblast growth factor in transgenic silkworm cocoons
Cited by: 25
Author(s): Feng Wang, Riyuan Wang, Yuancheng Wang, Ping Zhao, Qingyou Xia
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-81852-x

Modality-specific improvements in sensory processing among baseball players
Cited by: 9
Author(s): Koya Yamashiro, Yoshitake Yamazaki, Kanako Siiya, Koyuki Ikarashi, Yoshifumi Baba, Naofumi Otsuru, Hideaki Onishi, Daisuke Sato
Software Mentions: 2
Published: almost 4 years ago

10.22038/ijbms.2019.36189.8622

Filtered Kombucha tea ameliorates the leaky gut syndrome in young and old mice model of colitis.
Cited by: 4
Author(s): Nafiseh Pakravan, Fatemeh Kkermanian, Elaheh Mahmoudi
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph120100816

Cluster of Human Infections with Avian Influenza A (H7N9) Cases: A Temporal and Spatial Analysis
Cited by: 30
Author(s): Yi Zhang, Zhixiong Shen, Caiyun Ma, Chengsheng Jiang, Cindy Feng, Nivedita Shankar, Peng Yang, Wenjie Sun, Quanyi Wang
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijerph17041413

Space-Time Clustering Characteristics of Tuberculosis in Khyber Pakhtunkhwa Province, Pakistan, 2015–2019
Cited by: 5
Author(s): Sami Ullah, Hanita Daud, Sarat C. Dass, Hadi Fanaee-T, Husnul Kausarian, Alamgir Khalil
Software Mentions: 2
Published: over 4 years ago

10.1186/s13395-020-00229-2

Expression of MuRF1 or MuRF2 is essential for the induction of skeletal muscle atrophy and dysfunction in a murine pulmonary hypertension model
Cited by: 19
Author(s): Thanh Hung Nguyen, T. Scott Bowen, Antje Augstein, Antje Schauer, Alexander Gasch, Axel Linke, Siegfried Labeit, Volker Adams
Software Mentions: 2
Published: over 4 years ago

10.1002/ajmg.b.32239

Allelic association, DNA resequencing and copy number variation at the metabotropic glutamate receptor <i>GRM7</i> gene locus in bipolar disorder
Cited by: 30
Author(s): Radhika Kandaswamy, Andrew McQuillin, David Curtis, Hugh Gurling
Software Mentions: 2
Published: over 10 years ago

10.3390/ani10101850

Analysis of lncRNA Expression Profile during the Formation of Male Germ Cells in Chickens
Cited by: 9
Author(s): Wen Gao, Chen Zhang, Kai Jin, Yani Zhang
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2350-12-25

Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population
Cited by: 24
Author(s): Bonnie R. Joubert, David M. Reif, Stephen W. Edwards, Kevin Leiner, Edward Hudgens, Peter Egeghy, Jane Gallagher, Elaine Cohen Hubal
Software Mentions: 2
Published: over 13 years ago

10.3762/bjnano.8.167

Air–water interface of submerged superhydrophobic surfaces imaged by atomic force microscopy
Cited by: 13
Author(s): Markus Moosmann, Thomas Schimmel, Wilhelm Barthlott, Matthias Mail
Software Mentions: 2
Published: about 7 years ago

10.1186/1475-2867-13-116

Expression pattern of the apoptosis-stimulating protein of p53 family in p53+ human breast cancer cell lines
Cited by: 12
Author(s): Changsong Wang, Chunfang Gao, Yanping Chen, Jia Yin, Ping Wang, Xuexia Lv
Software Mentions: 2
Published: almost 12 years ago

10.3390/md18080407

Proteo-Transcriptomic Analysis Identifies Potential Novel Toxins Secreted by the Predatory, Prey-Piercing Ribbon Worm Amphiporus lactifloreus
Cited by: 12
Author(s): Björn M. von Reumont, Tim Lüddecke, Thomas Timm, Günter Lochnit, Andreas Vilcinskas, Jörn von Döhren, Maria A. Nilsson
Software Mentions: 2
Published: over 4 years ago

10.14202/vetworld.2018.620-626

Evaluation of wet cupping therapy on the arterial and venous blood parameters in healthy Arabian horses
Cited by: 3
Author(s): Turke Shawaf, Wael El-Deeb, Jamal Hussen, Mahmoud Hendi, Shahab Al-Bulushi
Software Mentions: 2
Published: over 6 years ago

10.1111/pbi.12535

The <i> <scp>A</scp> rabidopsis </i> transcriptional regulator <scp>DPB</scp> 3‐1 enhances heat stress tolerance without growth retardation in rice
Cited by: 51
Author(s): Hikaru Sato, Daisuke Todaka, Madoka Kudo, Junya Mizoi, Satoshi Kidokoro, Yu Zhao, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki
Software Mentions: 2
Published: almost 9 years ago

10.3390/plants10010042

Analgesic and Anti-Inflammatory Effects of Aucklandia lappa Root Extracts on Acetic Acid-Induced Writhing in Mice and Monosodium Iodoacetate-Induced Osteoarthritis in Rats
Cited by: 6
Author(s): Hee-Geun Jo, Geon-Yeong Lee, Chae Yun Baek, Ho Sueb Song, Donghun Lee
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pgen.1001042

The Fitness Landscapes of cis-Acting Binding Sites in Different Promoter and Environmental Contexts
Cited by: 34
Author(s): Ryan K. Shultzaberger, Daniel S. Malashock, Jack F. Kirsch, Michael B. Eisen
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pgen.1004282

The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human Cells
Cited by: 126
Author(s): Franck Picard, Jean‐Charles Cadoret, Benjamin Audit, A. Arnéodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie‐Noëlle Prioleau
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0042520

Functional and Structural Comparison of Pyrrolnitrin- and Iprodione-Induced Modifications in the Class III Histidine-Kinase Bos1 of Botrytis cinerea
Cited by: 57
Author(s): Sabine Fillinger, Sakhr Ajouz, Philippe C. Nicot, Pierre Leroux, Marc Bardin
Software Mentions: 2
Published: about 12 years ago