bioconductor: GDCRNATools | Projects

10.3389/fonc.2021.658165

Using Tumor-Infiltrating Immune Cells and a ceRNA Network Model to Construct a Prognostic Analysis Model of Thyroid Carcinoma
Cited by: 11
Author(s): Fan Zhang, Xiao‐Juan Yu, Zheyu Lin, Xichang Wang, Tengteng Gao, Di Teng, Weiping Teng
Software Mentions: 17
Published: over 3 years ago

10.7150/ijms.53531

Identification novel prognostic signatures for Head and Neck Squamous Cell Carcinoma based on ceRNA network construction and immune infiltration analysis
Cited by: 18
Author(s): Haiting Zhou, Yi He, Lingling Li, Cheng Wu, Guoqing Hu
Software Mentions: 16
Published: almost 4 years ago

10.3389/fbioe.2020.00515

Construction of a Competitive Endogenous RNA Network for Pancreatic Adenocarcinoma Based on Weighted Gene Co-expression Network Analysis and a Prognosis Model
Cited by: 4
Author(s): Jing Wang, Jinzhu Xiang, Xueling Li
Software Mentions: 13
Published: over 4 years ago

10.3389/fgene.2021.667610

The Construction and Analysis of ceRNA Network and Immune Infiltration in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Lugang Deng, Peixi Wang, Zhi Qu, Nan Liu
Software Mentions: 12
Published: about 3 years ago

10.3389/fimmu.2021.599207

Molecular and Clinical Characterization of LAG3 in Breast Cancer Through 2994 Samples
Cited by: 15
Author(s): Qiang Liu, Yihang Qi, Jie Zhai, Xiangyi Kong, Xiangyu Wang, Zhongzhao Wang, Yi Fang, Jing Wang
Software Mentions: 11
Published: over 3 years ago

10.3389/fbioe.2019.00257

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone Metastasis
Cited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: about 5 years ago

10.3389/fgene.2020.00785

Systematic Evaluation of the Diagnostic and Prognostic Significance of Competitive Endogenous RNA Networks in Prostate Cancer
Cited by: 3
Author(s): Zihu Guo, Han Liang, Yingxue Fu, Ziyin Wu, Yaohua Ma, Yueping Liu, Haiqing Wang, Li Jiang, Shengnan Liang, Zhenzhong Wang, Furong Li, Wei Xiao, Jingbo Wang, Yonghua Wang
Software Mentions: 9
Published: over 4 years ago

10.18632/aging.102424

The construction and analysis of tumor-infiltrating immune cell and ceRNA networks in recurrent soft tissue sarcoma
Cited by: 29
Author(s): Runzhi Huang, Tong Meng, Rui Chen, Penghui Yan, Jie Zhang, Peng Hu, Xiaolong Zhu, Huabin Yin, Dianwen Song, Zongqiang Huang
Software Mentions: 9
Published: about 5 years ago

10.3389/fgene.2019.00828

The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic Melanoma
Cited by: 19
Author(s): Runzhi Huang, Zhiwei Zeng, Guangyu Li, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Ruizhi Chang, Xu Zhang, Jie Zhang, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: about 5 years ago

10.1155/2020/5843874

Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney
Cited by: 1
Author(s): Xiaoqing Wang, Xiangyu Wu, Tianyou Li, Meng Cui, Lichao Zhu, Gang Wang, Feng Guo
Software Mentions: 8
Published: about 4 years ago

10.3389/fmolb.2021.675683

Targeted Demethylation of the PLOD2 mRNA Inhibits the Proliferation and Migration of Renal Cell Carcinoma
Cited by: 9
Author(s): Congcong Cao, Qian Ma, Xinbo Huang, Aolin Li, Jun Li, Jing Ye, Yaoting Gui
Software Mentions: 8
Published: over 3 years ago

10.3389/fmolb.2021.655126

Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: over 3 years ago

10.3390/cancers13081934

Cannabinoid Receptor Type-2 in B Cells Is Associated with Tumor Immunity in Melanoma
Cited by: 3
Author(s): Thomas Gruber, Steve Robatel, Mirela Kremenovic, Lukas Bäriswyl, Jürg Gertsch, Mirjam Schenk
Software Mentions: 7
Published: over 3 years ago

10.18632/aging.104116

Integrated analysis of a competing endogenous RNA network reveals an 11-lncRNA prognostic signature in ovarian cancer
Cited by: 3
Author(s): Yongjian Zhang, Hu Zhou, Mei‐Yin Zhang, Linan Xing, Chang Yang, Bairong Xia, Ge Lou
Software Mentions: 7
Published: about 4 years ago

10.1186/s13000-021-01118-y

Identification of immune-infiltrating cell-related biomarkers in hepatocellular carcinoma based on gene co-expression network analysis
Cited by: 6
Author(s): Yinghui Hou, Guizhi Zhang
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-019-50248-3

Integrated network analysis identifies hsa-miR-4756-3p as a regulator of FOXM1 in Triple Negative Breast Cancer
Cited by: 6
Author(s): Yuanliang Gu, Wenjuan Wang, Xuyao Wang, Hong-Yi Xie, Xiaojuan Ye, Peng Shu
Software Mentions: 6
Published: about 5 years ago

10.18632/aging.202393

The landscape of alternative splicing reveals novel events associated with tumorigenesis and the immune microenvironment in gastric cancer
Cited by: 2
Author(s): Shenghan Lou, Jian Zhang, Zhao Zhai, Xin Yin, Yimin Wang, Tianyi Fang, Yingwei Xue
Software Mentions: 6
Published: almost 4 years ago

10.1042/BSR20200049

The construction and analysis of tumor-infiltrating immune cells and ceRNA networks in metastatic adrenal cortical carcinoma
Cited by: 10
Author(s): Runzhi Huang, Ziqi Liu, Tingli Tian, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Yihan Liu, Zhenyu Li, Tong Meng, Jie Zhang, Zongqiang Huang
Software Mentions: 6
Published: over 4 years ago

10.1186/s12967-020-02233-y

IRGS: an immune-related gene classifier for lung adenocarcinoma prognosis
Cited by: 22
Author(s): Xiaoshun Shi, Ruidong Li, Xiaoying Dong, Allen M. Chen, Xiguang Liu, Di Lu, Siyang Feng, He Wang, Kaican Cai
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12935-019-0866-2

LncRNA H19 regulates PI3K–Akt signal pathway by functioning as a ceRNA and predicts poor prognosis in colorectal cancer: integrative analysis of dysregulated ncRNA-associated ceRNA network
Cited by: 45
Author(s): Min-Er Zhong, Yanyu Chen, Guannan Zhang, Lai Xu, Wei Ge, Bin Wu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-34160-w

Transcriptomic and functional network features of lung squamous cell carcinoma through integrative analysis of GEO and TCGA data
Cited by: 72
Author(s): Yin Li, Jie Gu, Fan Xu, Qinqing Zhu, Di Ge
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2020.00444

Multi-Omics Integration Reveals a Competitive Endogenous RNAs Network for the Identification of Progression Biomarkers and the Stratification of Patients Diagnosed With Nephroblastoma
Cited by: 2
Author(s): Jingbo Wang, Yuan Wang, Han Liang, Mohamed Shahen, Chaofeng Hu, Furong Li
Software Mentions: 5
Published: over 4 years ago

10.1172/jci.insight.138772

IL-32γ potentiates tumor immunity in melanoma
Cited by: 19
Author(s): Thomas Gruber, Mirela Kremenovic, Hassan Sadozai, Nives Rombini, Lukas Baeriswyl, Fabienne Maibach, Robert L. Modlin, Michel Gilliet, Diego von Werdt, Robert E. Hunger, S. Morteza Seyed Jafari, Giulia Parisi, Gabriel Abril-Rodríguez, Antoni Ribas, Mirjam Schenk
Software Mentions: 5
Published: about 4 years ago

10.7150/jca.44413

Comprehensive Analysis of the Tumor Microenvironment in Cutaneous Melanoma associated with Immune Infiltration
Cited by: 17
Author(s): Pan Wang, Xinyu Zhang, Nan Sun, Zhihong Zhao, Jie He
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12920-020-00757-2

Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma
Cited by: 40
Author(s): Arash Poursheikhani, Mohammad Reza Abbaszadegan, Negin Nokhandani, Mohammad Amin Kerachian
Software Mentions: 4
Published: over 4 years ago

10.3390/cancers12061431

Characterization of a Myeloid Activation Signature That Correlates with Survival in Melanoma Patients
Cited by: 1
Author(s): Mirela Kremenovic, Nives Rombini, Alfred A. Chan, Thomas Gruber, Lukas Bäriswyl, Delphine J. Lee, Mirjam Schenk
Software Mentions: 4
Published: over 4 years ago

10.3389/fcell.2020.00688

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Colon Adenocarcinoma Metastasis
Cited by: 30
Author(s): Zhengyan Chang, Runzhi Huang, Wanting Fu, Jiehan Li, Guo Ji, Jinglei Huang, Weijun Shi, Huabin Yin, Weifeng Wang, Tong Meng, Zongqiang Huang, Qing Wei, Huanlong Qin
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2021.652601

Construction and Comprehensive Prognostic Analysis of a lncRNA–miRNA–mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer
Cited by: 8
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Chuan Qin, Han Zhang, Ziwei Wang
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.614497

Molecular and Clinical Characterization of CCT2 Expression and Prognosis via Large-Scale Transcriptome Profile of Breast Cancer
Cited by: 6
Author(s): Qiang Liu, Yihang Qi, Xiangyi Kong, Xiangyu Wang, Wenxiang Zhang, Jie Zhai, Yazhe Yang, Yi Fang, Jing Wang
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2021.648111

Identification and Functional Prediction of Long Non-Coding RNAs in Dilated Cardiomyopathy by Bioinformatics Analysis
Cited by: 15
Author(s): Yuxiao Chen, Jie Ding, Wei-Er Zhou, Xuan Zhang, Xiaotong Sun, Xiying Wang, Chi Zhang, Li Ni, Guofeng Shao, Shen‐Jiang Hu, Jian Yang
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0234628

A lncRNA-miRNA-mRNA network for human primed, naive and extended pluripotent stem cells
Cited by: 7
Author(s): Zheng-lai Ma, Yanni Li, Yingying Zhang, Jiaxin Chen, Tao Tan, Yong Fan
Software Mentions: 3
Published: over 4 years ago

10.1186/s12885-019-5983-8

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue
Cited by: 208
Author(s): Ruisheng Zhou, Enxin Zhang, Sun Qi-zhong, Zeng Jie Ye, Jianwei Liu, Dajun Zhou, Ying Tang
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers13030570

Functional Interaction among lncRNA HOTAIR and MicroRNAs in Cancer and Other Human Diseases
Cited by: 44
Author(s): Monica Cantile, Maurizio Di Bonito, Maura C. Tracey, Gerardo Botti
Software Mentions: 3
Published: almost 4 years ago

10.1155/2021/4093426

Construction and Analysis of Survival-Associated Competing Endogenous RNA Network in Lung Adenocarcinoma
Cited by: 4
Author(s): Lixian Chen, Zhonglu Ren, Yongming Cai
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12920-021-00878-2

Expression and gene regulatory network of SNHG1 in hepatocellular carcinoma
Cited by: 4
Author(s): Chaoran Zheng, Shicheng Yu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.681579

Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction
Cited by: 8
Author(s): Lucieth Cruz Vieira, Natasha Andressa Nogueira Jorge, João Batista de Sousa, João Carlos Setúbal, Peter F. Stadler, Maria Tereza Machado Teles Walter
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2046248

Inhibition of MEIS3 Generates Cetuximab Resistance through c-Met and Akt
Cited by: 2
Author(s): Ping Cai, Yangyang Xie, Mingjun Dong, Qiaoqiao Zhu
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2020.00069

Integrative Clustering Reveals a Novel Subtype of Soft Tissue Sarcoma With Poor Prognosis
Cited by: 8
Author(s): Zhifeng Zhu, Zheng Jin, Haibo Zhang, Mei Zhang, Dahui Sun
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers11122008

Long Non-Coding RNA MAGI2-AS3 is a New Player with a Tumor Suppressive Role in High Grade Serous Ovarian Carcinoma
Cited by: 26
Author(s): Priyanka Gokulnath, Tiziana de Cristofaro, Ichcha Manipur, Tina Di Palma, Amata Amy Soriano, Mario Rosario Guarracino, Mariastella Zannini
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/1481937

Reconstruction of a lncRNA-Associated ceRNA Network in Endothelial Cells under Circumferential Stress
Cited by: 7
Author(s): Zhuhui Huang, William Adiwignya Winata, Kui Zhang, Yang Zhao, Li Yang, Ning Zhou, Sihan Zhou, Wei Fu, Boling Qiao, Guoqi Li, Yihui Shao, Jubing Zheng, Ran Dong
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2019.01517

UBASH3B Is a Novel Prognostic Biomarker and Correlated With Immune Infiltrates in Prostate Cancer
Cited by: 34
Author(s): Zijun Wang, Yinhuai Wang, Mou Peng, Yi Lee
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 4 years ago

10.1002/cam4.4132

Identification of a competing endogenous RNA axis “SVIL‐AS1/miR‐103a/ICE1” associated with chemoresistance in lung adenocarcinoma by comprehensive bioinformatics analysis
Cited by: 5
Author(s): Lili Guo, Ling Ding, Jiaguang Tang
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202507

Development and validation of an individual alternative splicing prognostic signature in gastric cancer
Cited by: 3
Author(s): Shenghan Lou, Jian Zhang, Zhao Zhai, Xin Yin, Yimin Wang, Tianyi Fang, Yingwei Xue
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms21114059

Long Non-Coding RNA HAND2-AS1 Acts as a Tumor Suppressor in High-Grade Serous Ovarian Carcinoma
Cited by: 16
Author(s): Priyanka Gokulnath, Tiziana de Cristofaro, Ichcha Manipur, Tina Di Palma, Amata Amy Soriano, Mario Rosario Guarracino, Mariastella Zannini
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.104162

LncRNA MAGI2-AS3 inhibits bladder cancer progression by targeting the miR-31-5p/TNS1 axis
Cited by: 25
Author(s): Congyi Tang, Yi Cai, Huichuan Jiang, Zhengtong Lv, Chengdong Yang, Haozhe Xu, Zhi Li, Yuan Li
Software Mentions: 1
Published: about 4 years ago

10.1002/jcb.29200

Identification of a potential prognostic lncRNA‐miRNA‐mRNA signature in endometrial cancer based on the competing endogenous RNA network
Cited by: 21
Author(s): Yiwei Wang, Ting Huang, Xiaojiang Sun, Yudong Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41416-021-01326-9

A miRNA signature predicts benefit from addition of hypoxia-modifying therapy to radiation treatment in invasive bladder cancer
Cited by: 5
Author(s): Mairah T Khan, Joely J. Irlam, Ronnie Rodrigues Pereira, Brian R. Lane, Helen Valentine, Kai Aragaki, Lars Dyrskjøt, David J. McConkey, Peter Hoskin, Ananya Choudhury, Catharine West
Software Mentions: 1
Published: over 3 years ago

Projects: bioconductor: GDCRNATools

Papers Mentioning GDCRNATools 48