Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran: org
Organising Projects
Papers that mentioned: 54
pypi: Counter
Counter package defines the "counter.Counter" class similar to bags or multisets in other languages.
Papers that mentioned: 54
cran: random
True Random Numbers using RANDOM.ORG
Papers that mentioned: 54
pypi: TRA
Trust region algorithms for non-linear optimisation.
Papers that mentioned: 54
bioconductor: ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)
Papers that mentioned: 54
bioconductor: GenVisR
Genomic Visualizations in R
Papers that mentioned: 54
pypi: find
find files and dirs
Papers that mentioned: 54
pypi: paml
A Pythonic transpiler for HTML/XML
Papers that mentioned: 54
cran: lordif
Logistic Ordinal Regression Differential Item Functioning using IRT
Papers that mentioned: 54
pypi: org
Papers that mentioned: 54
bioconductor: BEAT
BEAT - BS-Seq Epimutation Analysis Toolkit
Papers that mentioned: 54
pypi: EPP
EPP Client for Python
Papers that mentioned: 53
pypi: ReliefF
ReliefF feature selection algorithms
Papers that mentioned: 53
cran: rsem
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
Papers that mentioned: 53
pypi: Allegro
A python backend integration framework
Papers that mentioned: 53
bioconductor: MethylMix
MethylMix: Identifying methylation driven cancer genes
Papers that mentioned: 53
cran: EPP
Evaluation of Proximity Programs
Papers that mentioned: 53
pypi: Micro
Celery platform to create microservices
Papers that mentioned: 53
pypi: guppy
Guppy-PE -- A Python Programming Environment
Papers that mentioned: 53
pypi: HSV
HSV conversion tools
Papers that mentioned: 53
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: tree
Classification and Regression Trees
Papers that mentioned: 53
cran: PCL
Proximal Causal Learning
Papers that mentioned: 53
cran: Publish
Format Output of Various Routines in a Suitable Way for Reports and Publication
Papers that mentioned: 53
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
pypi: lsr
api de reconnaissance vocale avec une magnifique voix feminine
Papers that mentioned: 53
pypi: Ocean
GUI library with opengl renderer
Papers that mentioned: 53
pypi: x
UNKNOWN
Papers that mentioned: 53
cran: lsr
Companion to "Learning Statistics with R"
Papers that mentioned: 53
cran: MCM
Estimating and Testing Intergenerational Social Mobility Effect
Papers that mentioned: 53
cran: varSelRF
Variable Selection using Random Forests
Papers that mentioned: 53
pypi: ffmpeg
ffmpeg python package url [https://github.com/jiashaokun/ffmpeg]
Papers that mentioned: 52
pypi: Lego
Lego
Papers that mentioned: 52
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: caTools
Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Papers that mentioned: 52
pypi: app
a simple egg
Papers that mentioned: 52
cran: beeswarm
The Bee Swarm Plot, an Alternative to Stripchart
Papers that mentioned: 52
pypi: Cassandra
Generated Thrift interface to the Cassandra database
Papers that mentioned: 52
pypi: MissForest
Best imputation method.
Papers that mentioned: 52
pypi: trinity
The Trinity client for the Ethereum network
Papers that mentioned: 51
cran: RankAggreg
Weighted Rank Aggregation
Papers that mentioned: 51
pypi: like
A simple printer of nested lists
Papers that mentioned: 51
cran: CCM
Correlation Classification Method
Papers that mentioned: 51
pypi: network
A very simple networking library written by David Whale (@whaleygeek).
Papers that mentioned: 51
bioconductor: snpStats
SnpMatrix and XSnpMatrix classes and methods
Papers that mentioned: 51
pypi: CIM
Python implementation of the Common Information Model.
Papers that mentioned: 51
pypi: VESPA
Calculate astrophysical false positive probabilities for transiting exoplanet signals
Papers that mentioned: 51
pypi: Demeter
UNKNOWN
Papers that mentioned: 51
cran: popbio
Construction and Analysis of Matrix Population Models
Papers that mentioned: 51
cran: CIM
Compositional Impact of Migration
Papers that mentioned: 51
cran: Rmisc
Ryan Miscellaneous
Papers that mentioned: 51
cran: CP
Conditional Power Calculations
Papers that mentioned: 51
cran: BCT
Bayesian Context Trees for Discrete Time Series
Papers that mentioned: 51
cran: network
Classes for Relational Data
Papers that mentioned: 51
pypi: forecast
Implemetion of Book 'forcasting priceples and practise'
Papers that mentioned: 51
cran: forecast
Forecasting Functions for Time Series and Linear Models
Papers that mentioned: 51
cran: hier.part
Hierarchical Partitioning
Papers that mentioned: 50
cran: freesurfer
Wrapper Functions for 'Freesurfer'
Papers that mentioned: 50
cran: mapdata
Extra Map Databases
Papers that mentioned: 50
pypi: msa
Maven settings administrator
Papers that mentioned: 50
bioconductor: HTqPCR
Automated analysis of high-throughput qPCR data
Papers that mentioned: 50
cran: RWeka
R/Weka Interface
Papers that mentioned: 50
pypi: COMPAS
The COMPAS framework
Papers that mentioned: 50
bioconductor: karyoploteR
Plot customizable linear genomes displaying arbitrary data
Papers that mentioned: 50
cran: SLIDE
Single Cell Linkage by Distance Estimation is SLIDE
Papers that mentioned: 50
cran: io
A Unified Framework for Input-Output Operations in R
Papers that mentioned: 50
cran: dplR
Dendrochronology Program Library in R
Papers that mentioned: 50
pypi: io

Papers that mentioned: 50
cran: purrr
Functional Programming Tools
Papers that mentioned: 50
pypi: e
Evaluate and display command line expressions with python -me expr
Papers that mentioned: 50
pypi: metaphor
Neural network toolbox
Papers that mentioned: 50
pypi: plspm
A library implementing the Partial Least Squares Path Model algorithm
Papers that mentioned: 50
pypi: QPS
Q Publishing System (QPS) is a framework for custom Content Management Systems
Papers that mentioned: 50
pypi: open
A mutli-purpose file opener
Papers that mentioned: 50
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
pypi: Mind
Mind is library for games in Python
Papers that mentioned: 50
pypi: Extractor
bindings for GNU libextractor, the metadata extractor
Papers that mentioned: 49
pypi: CAL
Package dealing with date, time, and calendars.
Papers that mentioned: 49
cran: CCP
Significance Tests for Canonical Correlation Analysis (CCA)
Papers that mentioned: 49
pypi: builder
A framework for building batch processing pipelines
Papers that mentioned: 49
bioconductor: IVAS
Identification of genetic Variants affecting Alternative Splicing
Papers that mentioned: 49
pypi: dbscan
Theoretically efficient and practical parallel DBSCAN
Papers that mentioned: 49
cran: coloc
Colocalisation Tests of Two Genetic Traits
Papers that mentioned: 49
pypi: coloc
the COLOC method by Giambartolomei et al.
Papers that mentioned: 49
pypi: h5py
Read and write HDF5 files from Python
Papers that mentioned: 49
cran: ggseqlogo
A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
Papers that mentioned: 49
pypi: pyradiomics
Radiomics features library for python
Papers that mentioned: 49
cran: visNetwork
Network Visualization using 'vis.js' Library
Papers that mentioned: 49
pypi: dynamicTreeCut
Dynamic Tree Cut
Papers that mentioned: 49
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
cran: dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Papers that mentioned: 49
cran: dbscan
Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Papers that mentioned: 49
cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
pypi: simuPOP
Forward-time population genetics simulation environment
Papers that mentioned: 49
cran: regplot
Enhanced Regression Nomogram Plot
Papers that mentioned: 49
cran: mrbayes
Bayesian Summary Data Models for Mendelian Randomization Studies
Papers that mentioned: 48
bioconductor: GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
Papers that mentioned: 48
cran: SWIM
Scenario Weights for Importance Measurement
Papers that mentioned: 48
cran: ggtern
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Papers that mentioned: 48