bioconductor: HTqPCR | Projects | Ecosyste.ms: Papers

10.18632/oncotarget.16664

MiRNA profiling of gastrointestinal stromal tumors by next-generation sequencing
Cited by: 31
Author(s): Ugnė Gyvytė, Simonas Juzėnas, Violeta Šaltenienė, Juozas Kupčinskas, Lina Poškienė, Laimutis Kučinskas, Sonata Jarmalaitė, Kristina Stuopelytė, Rūta Steponaitienė, Georg Hemmrich-Stanisak, Matthias Hübenthal, Alexander Link, Sabine Franke, André Franke, Dalia Pangonytė, Vaiva Lesauskaitė, Limas Kupčinskas, Jurgita Skiecevičienė
Software Mentions: 8
Published: over 7 years ago

10.3389/fnins.2012.00187

Systems Biology, Bioinformatics, and Biomarkers in Neuropsychiatry
Cited by: 43
Author(s): Ali Alawieh, Fadi A. Zaraket, Jianliang Li, Stefania Mondello, Amaly Nokkari, Mahdi Razafsha, Bilal H. Fadlallah, Rose‐Mary Boustany, Firas Kobeissy
Software Mentions: 7
Published: almost 13 years ago

10.1371/journal.pone.0101581

Analysis of the Transcriptome in Hyperoxic Lung Injury and Sex-Specific Alterations in Gene Expression
Cited by: 25
Author(s): Krithika Lingappan, Chandramouleeswaran Srinivasan, Weiwu Jiang, Lihua Wang, Xanthi I. Couroucli, Bhagavatula Moorthy
Software Mentions: 6
Published: over 10 years ago

10.3390/ijms21124199

CCR5-Mediated Signaling is Involved in Invasion of Glioblastoma Cells in Its Microenvironment
Cited by: 39
Author(s): Metka Novak, Miha Koprivnikar Krajnc, Barbara Hrastar, Barbara Breznik, Bernarda Majc, Mateja Mlinar, Ana Rotter, Andrej Porčnik, Jernej Mlakar, Katja Stare, Richard G. Pestell, Tamara Lah Turnšek
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-019-53155-9

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data
Cited by: 10
Author(s): Nicolò Zanardi, Martina Morini, M. A. Tangaro, Federico Zambelli, Maria Carla Bosco, Luigi Varesio, Alessandra Eva, Davide Cangelosi
Software Mentions: 4
Published: almost 5 years ago

10.1093/jxb/eru094

Identification of predominant genes involved in regulation and execution of senescence-associated nitrogen remobilization in flag leaves of field grown barley
Cited by: 63
Author(s): Julien Hollmann, Per L. Gregersen, Karin Krupinska
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-016-2952-3

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response
Cited by: 46
Author(s): Marcos Paolinelli, José Manuel Villalobos-Escobedo, Philippe E. Rolshausen, Alfredo Herrera-Estrella, Clara E. Galindo-Sánchez, José Fabricio López-Hernández, Rufina Hernández-Martínez
Software Mentions: 4
Published: over 8 years ago

10.1186/s13104-021-05788-1

miRkit: R framework analyzing miRNA PCR array data
Cited by: 0
Author(s): Maria Tsagiopoulou, Anastasis Togkousidis, Nikolaos Pechlivanis, Μαρία Μανιού, Aristea Batsali, Angelos Matheakakis, Charalampos Pontikoglou, Fotis Psomopoulos
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0228764

Identification of microRNAs involved in NOD-dependent induction of pro-inflammatory genes in pulmonary endothelial cells
Cited by: 4
Author(s): Ann-Kathrin Vlacil, Evelyn Vollmeister, Wilhelm Bertrams, Florian Schoesser, Raghav Oberoi, Jutta Schuett, Harald Schuett, Sonja Huehn, Katrin Bedenbender, Bernd Schmeck, Bernhard Schieffer, Karsten Grote
Software Mentions: 3
Published: over 4 years ago

10.1186/s12967-019-1954-8

EV-associated miRNAs from peritoneal lavage as potential diagnostic biomarkers in colorectal cancer
Cited by: 27
Author(s): Berta Roman‐Canal, Jordi Tarragona, Cristian P. Moiola, Sònia Gatius, Sarah Bonnin, Maria Ruiz‐Miró, José Enrique Sierra, M. Rufas, Esperanza González, José M. Porcel, Antonio Gil‐Moreno, Juan M Falcón-Pérez, Julia Ponomarenko, Xavier Matías‐Guiu, Eva Colás
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-51578-y

EV-associated miRNAs from pleural lavage as potential diagnostic biomarkers in lung cancer
Cited by: 27
Author(s): Berta Roman‐Canal, Cristian P. Moiola, Sònia Gatius, Sarah Bonnin, Maria Ruiz‐Miró, Esperanza González, Amaia Ojanguren, José Luis Recuero Díaz, Antonio Gil‐Moreno, Juan Manuel Falcón‐Pérez, Julia Ponomarenko, José M. Porcel, Xavier Matías‐Guiu, Eva Colás
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0002117

Conjunctival MicroRNA Expression in Inflammatory Trachomatous Scarring
Cited by: 41
Author(s): Tamsyn Derrick, Chrissy h. Roberts, Megha Rajasekhar, Sarah E. Burr, Hassan Joof, Pateh Makalo, Robin L. Bailey, David Mabey, Matthew J. Burton, Martin J. Holland
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0097690

Altered Expression of Circulating MicroRNA in Plasma of Patients with Primary Osteoarthritis and In Silico Analysis of Their Pathways
Cited by: 83
Author(s): Verónica M. Borgonio Cuadra, Norma Celia González-Huerta, Sandra Romero-Córdoba, Alfredo Hidalgo-Miranda, Antonio Miranda‐Duarte
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0190439

Heterogeneous muscle gene expression patterns in patients with massive rotator cuff tears
Cited by: 7
Author(s): Michael C. Gibbons, Kathleen Fisch, Rajeswari Pichika, Timothy Cheng, Adam J. Engler, Simon Schenk, Joseph R. Lane, Anshu Singh, Samuel R. Ward
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0111539

Caspase-1/ASC Inflammasome-Mediated Activation of IL-1β–ROS–NF-κB Pathway for Control of Trypanosoma cruzi Replication and Survival Is Dispensable in NLRP3−/− Macrophages
Cited by: 49
Author(s): Nilay Dey, Mala Sinha, Shivali Gupta, Mariela Natacha González, Rong Fang, Janice J. Endsley, Bruce A. Luxon, Nisha Garg
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0132327

Analysis of Deregulated microRNAs and Their Target Genes in Gastric Cancer
Cited by: 37
Author(s): Simonas Juzėnas, Violeta Šaltenienė, Juozas Kupčinskas, Alexander Link, Gediminas Kiudelis, Laimas Jonaitis, Sonata Jarmalaitė, Limas Kupčinskas, Peter Malfertheiner, Jurgita Skiecevičienė
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0047301

Early Immunologic Events at the Tick-Host Interface
Cited by: 45
Author(s): Dar Heinze, J. Russ Carmical, Judith F. Aronson, Saravanan Thangamani
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0194530

MicroRNA expression in serum samples of sulfur mustard veterans as a diagnostic gateway to improve care
Cited by: 17
Author(s): Sedigheh Gharbi, Shahriar Khateri, Mohammad Reza Soroush, Mehdi Shamsara, Parisa Naeli, Ali Najafi, Eberhard Korsching, Seyed Javad Mowla
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers11060839

EV-Associated miRNAs from Peritoneal Lavage are a Source of Biomarkers in Endometrial Cancer
Cited by: 23
Author(s): Berta Roman‐Canal, Cristian P. Moiola, Sònia Gatius, Sarah Bonnin, Maria Ruiz‐Miró, Esperanza González, Xavier González-Tallada, Ivanna Llordella, Isabel Hernández, José M. Porcel, Antonio Gil‐Moreno, Juan Manuel Falcón‐Pérez, Julia Ponomarenko, Xavier Matías‐Guiu, Eva Colás
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.00381

HypoxamiRs Profiling Identify miR-765 as a Regulator of the Early Stages of Vasculogenic Mimicry in SKOV3 Ovarian Cancer Cells
Cited by: 22
Author(s): Yarely M. Salinas‐Vera, Dolores Gallardo‐Rincón, Raúl García‐Vázquez, Olga N. Hernández-de la Cruz, Laurence A. Marchat, Juan Antonio González-Barrios, Erika Ruíz‐García, Carlos Vázquez‐Calzada, Estefanía Contreras-Sanzón, Martha Resendiz-Hernández, Horacio Astudillo‐de la Vega, José L. Cruz-Colín, Alma D. Campos‐Parra, César López-Camarillo
Software Mentions: 2
Published: over 5 years ago

10.3389/fpsyt.2018.00081

Circulating MicroRNA Expression Levels Associated With Internet Gaming Disorder
Cited by: 13
Author(s): Minho Lee, Hyeyoung Cho, Seung Hyun Jung, Seon Hee Yim, Sung Min Cho, Ji Won Chun, Soo Hyun Paik, Yae Eun Park, Dong Huey Cheon, Ji Eun Lee, Jung Seok Choi, Daijin Kim, Yeun Jun Chung
Software Mentions: 2
Published: over 6 years ago

10.1186/1742-4690-9-5

Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients
Cited by: 135
Author(s): Kenneth W. Witwer, Amy P. Watson, Joel N. Blankson, Janice E. Clements
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12885-015-1327-5

Circulating miRNAs miR-34a and miR-150 associated with colorectal cancer progression
Cited by: 74
Author(s): Sinéad Aherne, Stephen F. Madden, David J. Hughes, Barbara Pardini, Alessio Naccarati, Miroslav Levý, Pavel Vodička, Paul Neary, Paul Dowling, Martin Clynes
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.10485

Identification of a circulating MicroRNA signature to distinguish recurrence in breast cancer patients
Cited by: 61
Author(s): Dezheng Huo, Wendy Clayton, Toshio F. Yoshimatsu, Jianjun Chen, Olufunmilayo I. Olopade
Software Mentions: 2
Published: over 8 years ago

10.1186/1756-0500-4-302

Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved functions compared to both monocots and dicots
Cited by: 81
Author(s): Michael W. Christiansen, Preben Bach Holm, Per L. Gregersen
Software Mentions: 1
Published: over 13 years ago

10.3390/medicina54020011

An Effect of Culture Media on Epithelial Differentiation Markers in Breast Cancer Cell Lines MCF7, MDA-MB-436 and SkBr3
Cited by: 9
Author(s): Valdis Pirsko, Inese Čakstiņa, Marta Priedite, Rasma Dortane, Linda Feldmane, Miki Nakazawa-Miklaševiča, Zanda Daneberga, Jānis Gardovskis, Edvīns Miklaševičs
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers11081203

Baseline Genomic Features in BRAFV600-Mutated Metastatic Melanoma Patients Treated with BRAF Inhibitor + MEK Inhibitor in Routine Care
Cited by: 7
Author(s): Baptiste Louveau, Fanélie Jouenne, Coralie Reger de Moura, Aurélie Sadoux, Barouyr Baroudjian, Julie Delyon, F. Herms, Adèle de Masson, Laetitia Da Meda, Maxime Battistella, Nicolas Dumaz, Célèste Lebbe, Samia Mourah
Software Mentions: 1
Published: over 5 years ago

10.1038/cddiscovery.2017.62

Mitochondrial DNA haplotypes induce differential patterns of DNA methylation that result in differential chromosomal gene expression patterns
Cited by: 30
Author(s): William Lee, Xin Sun, Te-Sha Tsai, Jacqueline L. Johnson, Jodee Gould, Daniel J. Garama, Daniel J. Gough, Matthew McKenzie, Ian A. Trounce, Justin C. St. John
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2014.00198

Murine cutaneous responses to the rocky mountain spotted fever vector, Dermacentor andersoni, feeding
Cited by: 13
Author(s): Dar Heinze, J. Russ Carmical, Judith F. Aronson, Franscisco Alarcon-Chaidez, Stephen K. Wikel, Saravanan Thangamani
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0028650

MicroRNA Expression Characterizes Oligometastasis(es)
Cited by: 233
Author(s): Yves A. Lussier, H. Rosie Xing, Joseph K. Salama, Nikolai N. Khodarev, Yong Huang, Qingbei Zhang, Sajid Khan, Xinan Yang, Michael D. Hasselle, Thomas E. Darga, Renuka Malik, Huiying Fan, Samantha Perakis, Matthew Filippo, Kimberly S. Corbin, Younghee Lee, Mitchell C. Posner, Steven J. Chmura, Samuel Hellman, Ralph R. Weichselbaum
Software Mentions: 1
Published: almost 13 years ago

10.3389/fonc.2018.00314

Glioblastoma Recurrence Correlates With Increased APE1 and Polarization Toward an Immuno-Suppressive Microenvironment
Cited by: 42
Author(s): Amanda L. Hudson, Nicole Parker, Peter Khong, Jonathan Parkinson, Trisha Dwight, Rowan J. Ikin, Ying Zhu, Jason Chen, Helen Wheeler, Viive M. Howell
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20123097

Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier
Cited by: 18
Author(s): Gerald Goodall, Vicki Leach, Chunfang Wang, Johnathan Cooper‐Knock, Paul R. Heath, David Baker, David Drew, M. Jill Saffrey, Julie E. Simpson, Ignacio A. Romero, Stephen B. Wharton
Software Mentions: 1
Published: over 5 years ago

10.1155/2016/6985903

Differential Expression of Inflammation-Related Genes in Children with Down Syndrome
Cited by: 12
Author(s): Cláudia Regina Santos Silva, Joice Matos Biselli, Bruna Lancia Zampieri, Wilson A. Silva, Jorge Estefano Santana de Souza, Matheus Carvalho Bürger, Eny Maria Goloni-Bertollo, Érika Cristina Pavarino
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes12091302

Modulation of Cellular MicroRNA by HIV-1 in Burkitt Lymphoma Cells—A Pathway to Promoting Oncogenesis
Cited by: 4
Author(s): Beatrice Relebogile Ramorola, Taahira Goolam-Hoosen, Leonardo Alves de Souza Rios, Shaheen Mowla
Software Mentions: 1
Published: about 3 years ago

10.1093/jxb/eru046

Members of the barley NAC transcription factor gene family show differential co-regulation with senescence-associated genes during senescence of flag leaves
Cited by: 62
Author(s): Michael W. Christiansen, Per L. Gregersen
Software Mentions: 1
Published: over 10 years ago

10.1186/1756-3305-5-26

Transcriptional profiling of the murine cutaneous response during initial and subsequent infestations with Ixodes scapularis nymphs
Cited by: 32
Author(s): Dar Heinze, Stephen K. Wikel, Saravanan Thangamani, Francisco J. Alarcón-Chaidez
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-16-S2-S12

Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling
Cited by: 12
Author(s): Sheng Da Hsu, Hsi‐Yuan Huang, Chih‐Hung Chou, Yiming Sun, Ming Hsu, Ann-Ping Tsou
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep11319

A cost-effective and efficient reprogramming platform for large-scale production of integration-free human induced pluripotent stem cells in chemically defined culture
Cited by: 93
Author(s): Jeanette Beers, Kaari L. Linask, Jane A. Chen, Lauren I. Siniscalchi, Yongshun Lin, Wei Zheng, Mahendra S. Rao, Guokai Chen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0162839

Single-Cell Gene Expression Analysis of Cholinergic Neurons in the Arcuate Nucleus of the Hypothalamus
Cited by: 26
Author(s): Jae Hoon Jeong, Young Woon Woo, Streamson C. Chua, Young Hwan Jo
Software Mentions: 1
Published: about 8 years ago

10.1038/srep20680

Human milk miRNAs primarily originate from the mammary gland resulting in unique miRNA profiles of fractionated milk
Cited by: 132
Author(s): Mohammed Alsaweed, Ching Tat Lai, Peter Hartmann, Donna T. Geddes, Foteini Kakulas
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0107218

Altered Expression of Immune-Related Genes in Children with Down Syndrome
Cited by: 23
Author(s): Bruna Lancia Zampieri, Joice Matos Biselli, Jorge Estefano Santana de Souza, Matheus Carvalho Bürger, Wilson A. Silva Júnior, Eny Maria Goloni-Bertollo, Érika Cristina Pavarino
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0186841

MicroRNAs expression profile in solid and unicystic ameloblastomas
Cited by: 12
Author(s): Amaia Setien-Olarra, Xabier Marichalar-Mendía, Naiara G. Bediaga, Pablo Aguirre-Echebarria, José Manuel Aguirre‐Urízar, Adalberto Mosqueda‐Taylor
Software Mentions: 1
Published: about 7 years ago

10.1038/srep22359

Starving honey bee (Apis mellifera) larvae signal pheromonally to worker bees
Cited by: 48
Author(s): Xingjian He, Xue Chuan Zhang, Wu Jiang, Andrew B. Barron, Jian Hui Zhang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22477

Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma
Cited by: 124
Author(s): Nicole Parker, Amanda L. Hudson, Peter Khong, Jonathan Parkinson, Trisha Dwight, Rowan J. Ikin, Ying Zhu, Zhangkai J. Cheng, Fatemeh Vafaee, Jason Chen, Helen Wheeler, Viive M. Howell
Software Mentions: 1
Published: over 8 years ago

10.1038/srep34504

Dual targeting of ANGPT1 and TGFBR2 genes by miR-204 controls angiogenesis in breast cancer
Cited by: 56
Author(s): Ali Flores-Pérez, Laurence A. Marchat, Sergio Rodríguez‐Cuevas, Verónica Bautista-Piña, Alfredo Hidalgo-Miranda, Elena Aréchaga Ocampo, Mónica Sierra Martínez, Carlos Palma‐Flores, Miguel A. Fonseca-Sanchéz, Horacio Astudillo‐de la Vega, Erika Ruiz‐García, Juan Antonio González-Barrios, Carlos Pérez‐Plasencia, María L. Streber, César López-Camarillo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0050141

Oligo- and Polymetastatic Progression in Lung Metastasis(es) Patients Is Associated with Specific MicroRNAs
Cited by: 173
Author(s): Yves A. Lussier, Nikolai N. Khodarev, Kelly Regan, Kimberly S. Corbin, LI Hai-quan, Sabha Ganai, Sajid Khan, Jennifer L. Gnerlich, Thomas E. Darga, Huiying Fan, Oleksiy Karpenko, Philip B. Paty, Mitchell C. Posner, Steven J. Chmura, Samuel Hellman, Mark K. Ferguson, Ralph R. Weichselbaum
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0146722

Microvesicles from Mesenchymal Stromal Cells Are Involved in HPC-Microenvironment Crosstalk in Myelodysplastic Patients
Cited by: 67
Author(s): Sandra Muntión, Teresa Lopes Ramos, Maria Díez-Campelo, Beatriz Rosón, Luís Ignacio Sánchez-Abarca, Irena Misiewicz-Krzemińska, Silvia Preciado, María Eugenia Sarasquete, Javier De Las Rivas, Marcos Cabezas González, Fermín Sánchez‐Guijo, María-Consuelo del Cañizo
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0130909

Molecular Analysis of Mixed Endometrioid and Serous Adenocarcinoma of the Endometrium
Cited by: 23
Author(s): Kate Lawrenson, Elham Pakzamir, Biao Liu, Janet M. Lee, Melissa K. Delgado, Kara Duncan, Simon A. Gayther, Song Liu, Lynda D. Roman, Paulette Mhawech‐Fauceglia
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0031904

Identification and Pathway Analysis of microRNAs with No Previous Involvement in Breast Cancer
Cited by: 40
Author(s): Sandra Romero-Córdoba, Sergio Rodríguez‐Cuevas, Rosa Rebollar-Vega, Valeria Quintanar-Jurado, Antonio Maffuz‐Aziz, Gerardo Jiménez‐Sánchez, Verónica Bautista-Piña, Rocío Arellano-Llamas, Alfredo Hidalgo-Miranda
Software Mentions: 1
Published: over 12 years ago

Projects: bioconductor: HTqPCR

Papers Mentioning HTqPCR 50