Ecosyste.ms: Papers

10.1371/journal.pone.0225734

PyLandStats: An open-source Pythonic library to compute landscape metrics
Cited by: 19
Author(s): Martí Bosch
Software Mentions: 11
Published: almost 5 years ago

10.12688/f1000research.2-191.v2

taxize: taxonomic search and retrieval in R
Cited by: 90
Author(s): Scott Chamberlain, Eduard Szöcs
Software Mentions: 8
Published: almost 11 years ago

10.1186/s12864-020-06990-4

Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies
Cited by: 13
Author(s): Sara Lado, Jean P. Elbers, Mark F. Rogers, José Melo‐Ferreira, Adiya Yadamsuren, Jukka Corander, Petr Hořín, Pamela A. Burger
Software Mentions: 6
Published: about 4 years ago

10.3389/fvets.2021.699352

The Impact of Socioeconomic Factors on Knowledge, Attitudes, and Practices of Dog Owners on Dog Rabies Control in Thailand
Cited by: 6
Author(s): Sith Premashthira, Sarin Suwanpakdee, Weerapong Thanapongtharm, Onpawee Sagarasaeranee, Weerakorn Thichumpa, Chayanin Sararat, Anuwat Wiratsudakul
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0215137

Quanfima: An open source Python package for automated fiber analysis of biomaterials
Cited by: 14
Author(s): Roman Shkarin, Andrei Shkarin, Svetlana Shkarina, A. Cecilia, Roman A. Surmenev, Venera Weinhardt, Tilo Baumbach, Ralf Mikut
Software Mentions: 5
Published: over 5 years ago

10.3389/fninf.2014.00024

BROCCOLI: Software for fast fMRI analysis on many-core CPUs and GPUs
Cited by: 67
Author(s): Anders Eklund, Paul Dufort, Mattias Villani, Stephen M. LaConte
Software Mentions: 5
Published: over 10 years ago

10.1093/gigascience/giz076

Open Humans: A platform for participant-centered research and personal data exploration
Cited by: 39
Author(s): Bastian Greshake Tzovaras, Misha Angrist, Kevin J. Arvai, Mairi Dulaney, Vero Estrada-Galiñanes, Beau Gunderson, T. Head, Dana Lewis, Oded Nov, Orit Shaer, Athina Tzovara, Jason Bobe, Mad Price Ball
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph181910191

Seasonal Variation, Chemical Composition, and PMF-Derived Sources Identification of Traffic-Related PM1, PM2.5, and PM2.5–10 in the Air Quality Management Region of Žilina, Slovakia
Cited by: 7
Author(s): Dušan Jandačka, Daniela Ďurčanská
Software Mentions: 3
Published: almost 3 years ago

10.1016/j.cub.2020.04.042

Two Distinct Types of Eye-Head Coupling in Freely Moving Mice
Cited by: 93
Author(s): Arne F. Meyer, John O’Keefe, Jasper Poort
Software Mentions: 3
Published: over 4 years ago

10.1007/s00044-021-02715-8

n-Propyl 6-amino-2,6-dideoxy-2,2-difluoro-β-d-glucopyranoside is a good inhibitor for the β-galactosidase from E. coli
Cited by: 2
Author(s): Immo Serbian, Erik Prell, Cornelius Fischer, Hans‐Peter Deigner, René Csuk
Software Mentions: 3
Published: over 3 years ago

10.1093/gigascience/giaa148

Chromosome-level reference genome of the European wasp spider<i>Argiope bruennichi</i>: a resource for studies on range expansion and evolutionary adaptation
Cited by: 29
Author(s): Monica M. Sheffer, Anica Hoppe, Henrik Krehenwinkel, Gabriele Uhl, Andreas W. Kuß, Lars Riff Jensen, C. J. Jensen, Rosemary G. Gillespie, Katharina J. Hoff, Stefan Prost
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0249327

Otolith chemical fingerprints of skipjack tuna (Katsuwonus pelamis) in the Indian Ocean: First insights into stock structure delineation
Cited by: 4
Author(s): Iraide Artetxe-Arrate, Igaratza Fraile, Jessica Farley, Audrey M. Darnaude, Naomi Clear, Naiara Rodríguez-Ezpeleta, David L. Dettman, Christophe Pécheyran, Iñigo Krug, Anaïs Médieu, Mohamed Ahusan, Craig Proctor, Asep Priatna, Pratiwi Puji Lestari, Campbell R. Davies, Francis Marsac, Hilário Murua
Software Mentions: 3
Published: over 3 years ago

10.1093/gigascience/giy116

Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
Cited by: 23
Author(s): Ming Wen, Justin H. J. Ng, Feng Zhu, Yok Teng Chionh, Wan Ni Chia, Ian H. Mendenhall, Benjamin Py-H Lee, Aaron T. Irving, Lin‐Fa Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12887-016-0568-z

Early days of life are crucial for child survival in Gamo Gofa Zone, Southern Ethiopia: A community based study
Cited by: 12
Author(s): Girma Temam Shifa, Ahmed Ali Ahmed, Alemayehu Worku Yalew
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0257897

Community risk perception and barriers for the practice of COVID-19 prevention measures in Northwest Ethiopia: A qualitative study
Cited by: 12
Author(s): Aragaw Tesfaw, Getachew Arage, Fentaw Teshome, Wubet Taklual, Tigist Seid, Emaway Belay, Gashaw Mehiret
Software Mentions: 2
Published: almost 3 years ago

10.1098/rsos.170436

Accelerating adaptive inverse distance weighting interpolation algorithm on a graphics processing unit
Cited by: 19
Author(s): Gang Mei, Lina Xu, Nengxiong Xu
Software Mentions: 2
Published: about 7 years ago

10.1371/currents.dis.31a8995ced321301466db400f1357829

Application of Behavioral Theories to Disaster and Emergency Health Preparedness: A Systematic Review
Cited by: 74
Author(s): Luche Tadesse Ejeta, Ali Ardalan, Douglas Paton
Software Mentions: 2
Published: over 9 years ago

10.1155/2014/171574

Evaluating the Power of GPU Acceleration for IDW Interpolation Algorithm
Cited by: 18
Author(s): Gang Mei
Software Mentions: 2
Published: over 10 years ago

10.1074/mcp.TIR120.002100

Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching
Cited by: 26
Author(s): Ameera Raudah Ahmad Izaham, Nichollas E. Scott
Software Mentions: 2
Published: about 4 years ago

10.3390/s18124372

Toward Security Enhanced Provisioning in Industrial IoT Systems
Cited by: 12
Author(s): Sungmoon Kwon, Jaehan Jeong, Taeshik Shon
Software Mentions: 2
Published: almost 6 years ago

10.1002/2211-5463.12970

Autophagy under glucose starvation enhances protein translation initiation in response to re‐addition of glucose in C2C12 myotubes
Cited by: 6
Author(s): Norihiro Nakai, Saki Kitai, Noriko Iida, Sachika Inoue, Kazuhiko Higashida
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-019-6211-2

The genomic diversification of grapevine clones
Cited by: 60
Author(s): Amanda M. Vondras, Andrea Minio, Barbara Blanco‐Ulate, Rosa Figueroa‐Balderas, Michael A. Penn, Yongfeng Zhou, Danelle Seymour, Zirou Ye, Dingren Liang, Lucero K. Espinoza, Michael M. Anderson, M. Andrew Walker, Dario Cantu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-15-491

Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes
Cited by: 95
Author(s): Vaihiti Teaniniuraitemoana, Arnaud Huvet, Peva Levy, Christophe Klopp, Émeline Lhuillier, Nabila Gaertner‐Mazouni, Yannick Gueguen, Gilles Le Moullac
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2431-10-93

Barriers to implementation of the HIV guidelines in the IMCI algorithm among IMCI trained health workers in Zambia
Cited by: 13
Author(s): Nantalile Mugala, Wilbroad Mutale, Penny Kalesha, Elijah Sinyinza
Software Mentions: 2
Published: almost 14 years ago

10.1186/1475-9276-8-25

Community perceptions and factors influencing utilization of health services in Uganda
Cited by: 80
Author(s): S Bakeera, Sarah Wamala, Sandro Galea, Andrew Ellias State, Stefan Peterson, George Pariyo
Software Mentions: 1
Published: over 15 years ago

10.29337/ijsp.153

Comparison of Surgical Site Infection After Skin Closure by Prolene or Staples in Bilateral Simultaneous Knee Arthroplasty Patients: A Parallel Design Randomized Controlled Trial Protocol
Cited by: 1
Author(s): Obada Hasan, Ahsun Jiwani, Laraib Mazhar, Dilshad Begum, Riaz Hussain Lakdawala, Shahryar Noordin
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.587696

Genomic Characterization of Two Shiga Toxin–Converting Bacteriophages Induced From Environmental Shiga Toxin–Producing Escherichia coli
Cited by: 2
Author(s): Yujie Zhang, Yen‐Te Liao, A. Salvador, Vivian C.H. Wu
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-14-476

The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences
Cited by: 58
Author(s): Evgeny Leushkin, Roman A. Sutormin, Elena Nabieva, Aleksey A. Penin, Alexey S. Kondrashov, Maria D. Logacheva
Software Mentions: 1
Published: about 11 years ago

10.1186/s12913-018-3055-4

High antiretroviral therapy service delivery satisfaction and itsʼ associated factors at Midre-genet hospital; Northwest Tigray, Ethiopia
Cited by: 15
Author(s): Kiflay Gebremariam Atsebeha, Daniel Haile Chercos
Software Mentions: 1
Published: over 6 years ago

10.1186/s12913-017-2490-y

Barriers to utilization of postnatal care at village level in Klaten district, central Java Province, Indonesia
Cited by: 47
Author(s): Ari Probandari, Akhda Arcita, Kothijah Kothijah, Eti Poncorini Pamungkasari
Software Mentions: 1
Published: about 7 years ago

10.1186/s12911-016-0321-4

The effect of an interactive weekly mobile phone messaging on retention in prevention of mother to child transmission (PMTCT) of HIV program: study protocol for a randomized controlled trial (WELTEL PMTCT)
Cited by: 19
Author(s): Patricia Opondo Awiti, Alessandra Grotta, Mia van der Kop, John Dusabe, Anna Thorson, JW Mwangi, Rino Belloco, Richard Lester, Laura Ternent, Edwin Were, Anna Mia Ekström
Software Mentions: 1
Published: about 8 years ago

10.1186/s12889-021-10604-3

Public health practitioner perspectives on dealing with measles outbreaks if high anti-vaccination sentiment is present
Cited by: 3
Author(s): Penelope Robinson, Kerrie Wiley, Chris Degeling
Software Mentions: 1
Published: over 3 years ago

10.1136/bmj.h5102

Use of the English urgent referral pathway for suspected cancer and mortality in patients with cancer: cohort study
Cited by: 78
Author(s): Henrik Møller, Carolynn Gildea, David Meechan, Greg Rubin, Thomas Round, Peter Vedsted
Software Mentions: 1
Published: almost 9 years ago

10.1155/2021/5523787

Physicians’ Attitude towards Electronic Medical Record Systems: An Input for Future Implementers
Cited by: 3
Author(s): Mulugeta Hayelom Kalayou, Berhanu Fikadie Endehabtu, Habtamu Alganeh Guadie, Zeleke Abebaw, Kassahun Dessie, Shekur Mohammed Awol, Nebyu Demeke Mengestie, Abraham Yeneneh, Binyam Tilahun
Software Mentions: 1
Published: about 3 years ago

10.12669/pjms.37.1.3666

Genetic polymorphism of the prostasin gene in hypertensive pregnant Pakistani females
Cited by: 0
Author(s): Saima Ejaz, Anwar Ali, Sumaira Riffat, Atif Mahmood, Kamran Azim
Software Mentions: 1
Published: almost 4 years ago

10.12669/pjms.335.12982

Correlation between Hyperhomocysteinemia and Common Carotid Artery Intima media Thickness in Carbamazepine treated Epileptic patients using Ultrasonography
Cited by: 4
Author(s): Shazia Bano, Nudrat Anwar Zuberi, Syed Munawar Alam
Software Mentions: 1
Published: almost 7 years ago

10.11604/pamj.2020.36.152.23944

The severity of fall injuries in Saudi Arabia: a cross-sectional study
Cited by: 0
Author(s): Mohamed Abdel Razik, Faisl Abdulmohsin Alslimah, Khalid Saeed Alghamdi, Mohammed Abdulaziz Altamimi, Adel Ahmed Alzhrani, Naif Mutrik Alqahtani, Sami Munahi Alshalawi
Software Mentions: 1
Published: over 4 years ago

10.11604/pamj.2016.23.24.8506

Apport des moyens endoscopiques dans la dilatation des sténoses caustiques de l’œsophage
Cited by: 2
Author(s): Seydou Togo, Ouattara Abdoulaye, Li Xing, Sanogo Zimogo Zi, S Koumaré, Yang Wen, Sankare Ibrahim, Toure Cheik Ahmed Sekou, Maiga Ibrahim Boubacar, Jacque Saye, Dakouo Dodino Jerome, Toure Ousmane Dantoumé, Sadio Yéna
Software Mentions: 1
Published: over 8 years ago

10.11604/pamj.2018.30.51.14420

Reasons for low level of skilled birth attendance in Afar pastoralist community, North East Ethiopia: a qualitative exploration
Cited by: 11
Author(s): Mohammed Ahmed Ibrhim, Meaza Demissie, Araya Abrha Medhanyie, Alemayehu Worku, Yemane Berhane
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.7003

Digital dissection of the pelvis and hindlimb of the red-legged running frog,<i>Phlyctimantis maculatus</i>, using Diffusible Iodine Contrast Enhanced computed microtomography (DICE<i>μ</i>CT)
Cited by: 8
Author(s): Amber J. Collings, Christopher T. Richards
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0128040

TpUB05, a Homologue of the Immunodominant Plasmodium falciparum Protein UB05, Is a Marker of Protective Immune Responses in Cattle Experimentally Vaccinated against East Coast Fever
Cited by: 4
Author(s): Jerome Nyhalah Dinga, Mark Wamalwa, Dieudonné Lemuh Njimoh, Moses Njahira, Appolinaire Djikeng, Rob Skilton, V. P. K. Titanji, Roger Pellé
Software Mentions: 1
Published: over 9 years ago

10.1007/s10703-016-0256-5

From non-preemptive to preemptive scheduling using synchronization synthesis
Cited by: 5
Author(s): Pavol Černý, Edmund M. Clarke, Thomas A. Henzinger, Arjun Radhakrishna, Leonid Ryzhyk, Roopsha Samanta, Thorsten Tarrach
Software Mentions: 1
Published: almost 8 years ago

10.29024/aogh.23

The Use and Perceived Barriers of the Partograph at Public Health Institutions in East Gojjam Zone, Northwest Ethiopia
Cited by: 3
Author(s): Desalegne Amare Zelellw, Teketo Kassaw Tegegne
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2021.643705

Are They Calling My Name? Attention Capture Is Reflected in the Neural Tracking of Attended and Ignored Speech
Cited by: 12
Author(s): Björn Holtze, Manuela Jaeger, Stefan Debener, Kamil Adiloğlu, Bojana Mirkovic
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyt.2020.564364

Impact of Coronavirus Disease (COVID-19) Pandemic on Psychological Well-Being of the Pakistani General Population
Cited by: 25
Author(s): Adeel Ahmed Khan, Fahad Saqib Lodhi, Unaib Rabbani, Zeeshan Ahmed, Saidul Abrar, Saamia Arshad, Saadia Irum, Muhammad Imran Khan
Software Mentions: 1
Published: over 3 years ago

10.3389/fpubh.2021.621433

Harnessing Clinical Trial Capacity to Mitigate Zoonotic Diseases: The Role of Expert Scientists in Ethiopia
Cited by: 0
Author(s): Senait Belay, Mirutse Giday, Tsegahun Manyazewal
Software Mentions: 1
Published: over 3 years ago

10.1093/gbe/evz045

The Molecular Basis of Freshwater Adaptation in Prawns: Insights from Comparative Transcriptomics of Three <i>Macrobrachium</i> Species
Cited by: 19
Author(s): Rahi Lifat, Peter B. Mather, Tariq Ezaz, David A. Hurwood
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-4755-9-13

Parent-young people communication about sexual and reproductive health in E/Wollega zone, West Ethiopia: Implications for interventions
Cited by: 62
Author(s): Dessalegn W Tesso, Mesganaw Fantahun, Fikre Enquselassie
Software Mentions: 1
Published: about 12 years ago

10.1155/2014/829059

Accelerating Content-Based Image Retrieval via GPU-Adaptive Index Structure
Cited by: 3
Author(s): Lei Zhu
Software Mentions: 1
Published: over 10 years ago

10.1155/2017/6365172

Incidence and Etiology of Surgical Site Infections among Emergency Postoperative Patients in Mbarara Regional Referral Hospital, South Western Uganda
Cited by: 34
Author(s): Abubaker Lubega, Joel Bazira, Najjuka Justina Lucy
Software Mentions: 1
Published: over 7 years ago