pypi: Counter | Projects | Ecosyste.ms: Papers

10.1016/j.celrep.2019.12.057

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
Cited by: 118
Author(s): James Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noèlia Díaz, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinić, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, K Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
Software Mentions: 7
Published: almost 5 years ago

10.7554/eLife.55249

Generation of inner ear hair cells by direct lineage conversion of primary somatic cells
Cited by: 49
Author(s): Louise Menendez, Talon Trecek, Suhasni Gopalakrishnan, Litao Tao, Alexander L. Markowitz, Haoze V Yu, Xizi Wang, Juan Llamas, Chi‐Chou Huang, James Lee, Radha Kalluri, Justin K. Ichida, Neil Segil
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0044185

Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics
Cited by: 23
Author(s): Alessandro Coppe, Stefania Bortoluzzi, Giulia Murari, Ilaria A. M. Marino, Lorenzo Zane, Chiara Papetti
Software Mentions: 4
Published: over 12 years ago

10.1186/s13014-015-0453-1

The Focinator - a new open-source tool for high-throughput foci evaluation of DNA damage
Cited by: 44
Author(s): Sebastian Oeck, Nathalie M. Malewicz, Sebastian Hurst, Justine Rudner, Verena Jendrossek
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.5453

Raritas: a program for counting high diversity categorical data with highly unequal abundances
Cited by: 1
Author(s): David Lazarus, Johan Renaudie, Dorina Lenz, Patrick Diver, Jens Klump
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.20062

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion
Cited by: 122
Author(s): Damian Kao, Alvina G. Lai, Evangelia Stamataki, Silvana Rošić, Νικόλαος Κωνσταντινίδης, Erin Jarvis, Alessia Di Donfrancesco, Natalia Pouchkina-Stancheva, Marie Sémon, Marco Grillo, Heather S. Bruce, Suyash Kumar, Igor Siwanowicz, Andy Le, Andrew Lemire, Michael B. Eisen, Cassandra G. Extavour, William E. Browne, Carsten Wolff, Michalis Averof, Nipam H. Patel, Peter Sarkies, Anastasios Pavlopoulos, A. Aziz Aboobaker
Software Mentions: 3
Published: about 8 years ago

10.1002/cam4.3474

Molecular and immunological associations of elevated serum lactate dehydrogenase in metastatic melanoma patients: A fresh look at an old biomarker
Cited by: 8
Author(s): Grant M. Fischer, Fernando Carapeto, Aron Y. Joon, Lauren E. Haydu, Huiqin Chen, Fuchenchu Wang, John S. Van Arnam, Jennifer L. McQuade, Khalida Wani, John M. Kirkwood, John F. Thompson, Michael T. Tetzlaff, Alexander J. Lazar, Hussein A. Tawbi, Jeffrey E. Gershenwald, Richard A. Scolyer, Georgina V. Long
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0164164

Neuronal Splicing Regulator RBFOX3 (NeuN) Regulates Adult Hippocampal Neurogenesis and Synaptogenesis
Cited by: 42
Author(s): Yi‐Wen Lin, Hanying Wang, De-Fong Huang, Pei-Fen Hsieh, Min Lin, Chih-Hsuan Chou, Wu I-Ju, Guo-Jen Huang, Susan Shur‐Fen Gau, Hsiang‐Po Huang
Software Mentions: 2
Published: about 8 years ago

10.3389/fnagi.2020.587989

Differential Profile of Systemic Extracellular Vesicles From Sporadic and Familial Alzheimer’s Disease Leads to Neuroglial and Endothelial Cell Degeneration
Cited by: 14
Author(s): Juan Villar-Vesga, Julián Henao‐Restrepo, Daniëlle C Voshart, David Aguillón, Andrés Villegas, Diana Castaño, Julián D. Arias-Londoño, Inge S. Zuhorn, Laís Ribovski, Lara Barazzuol, Gloria Patricia Cardona‐Gómez, Rafael Posada‐Duque
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pgen.1004614

Myosin Vb Mediated Plasma Membrane Homeostasis Regulates Peridermal Cell Size and Maintains Tissue Homeostasis in the Zebrafish Epidermis
Cited by: 29
Author(s): Sonal, Jaydeep Sidhaye, Mandar Phatak, Shamik Banerjee, Aditya Mulay, Ojas Deshpande, Sourabh Bhide, Tressa Jacob, Ines Gehring, Christiane Nuesslein-Volhard, Mahendra Sonawane
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.RA120.015398

AggreCount: an unbiased image analysis tool for identifying and quantifying cellular aggregates in a spatially defined manner
Cited by: 28
Author(s): Jacob Klickstein, Sirisha Mukkavalli, Malavika Raman
Software Mentions: 2
Published: about 4 years ago

10.1016/j.dib.2014.09.006

Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization
Cited by: 12
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Yves Nys, Joël Gautron
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.70452

Variation in human herpesvirus 6B telomeric integration, excision, and transmission between tissues and individuals
Cited by: 5
Author(s): Michael L. Wood, Colin Veal, Rita Neumann, Nicolás M. Suárez, Jenna Nichols, Andrei J Parker, Diana Martín, Simon P. R. Romaine, Veryan Codd, Nilesh J. Samani, Adriaan A. Voors, Maciej Tomaszewski, Louis Flamand, Andrew J. Davison, Nicola J. Royle
Software Mentions: 2
Published: over 3 years ago

10.1080/21678421.2016.1213852

Rare genetic variation in UNC13A may modify survival in amyotrophic lateral sclerosis
Cited by: 22
Author(s): Ben Gaastra, Aleksey Shatunov, Sara L. Pulit, Ashley Jones, William Sproviero, Alexandra Gillett, Zhongbo Chen, Janine Kirby, Isabella Fogh, John Powell, P. Nigel Leigh, Karen Morrison, Pamela J. Shaw, Christopher E. Shaw, Leonard H van den Berg, Jan H. Veldink, Cathryn M. Lewis, Ammar Al‐Chalabi
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0114419

MicroRNA-7 Inhibits Multiple Oncogenic Pathways to Suppress HER2Δ16 Mediated Breast Tumorigenesis and Reverse Trastuzumab Resistance
Cited by: 48
Author(s): Felicia C. Huynh, Frank E. Jones
Software Mentions: 2
Published: about 10 years ago

10.1093/database/baw116

Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes
Cited by: 2
Author(s): Navneet Tomar, Aashwin Mishra, Nirotpal Mrinal, B. Jayaram
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0175012

The adenosine generating enzymes CD39/CD73 control microglial processes ramification in the mouse brain
Cited by: 50
Author(s): Marina Matyash, Oleksandr Zabiegalov, Stefan Wendt, Vitali Matyash, Helmut Kettenmann
Software Mentions: 1
Published: over 7 years ago

10.1016/j.cell.2018.07.002

Heparan Sulfate Organizes Neuronal Synapses through Neurexin Partnerships
Cited by: 112
Author(s): Peng Zhang, H. Peter Lu, Rui T. Peixoto, Mary Pines, Yuan Ge, Shinichiro Oku, Tabrez J. Siddiqui, Yicheng Xie, Wen-Lan Wu, Stephanie Archer-Hartmann, Kouji Yoshida, Kenji F. Tanaka, A. Radu Aricescu, Parastoo Azadi, Michael D. Gordon, Bernardo L. Sabatini, Rachel Wong, Ann Marie Craig
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9020412

Astrocyte Infection during Rabies Encephalitis Depends on the Virus Strain and Infection Route as Demonstrated by Novel Quantitative 3D Analysis of Cell Tropism
Cited by: 33
Author(s): Madlin Potratz, Luca M. Zaeck, Michael Christen, Verena te Kamp, Antonia Klein, Tobias Nolden, Conrad M. Freuling, Thomas Müller, Stefan Finke
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells8050427

Nuclear Deformation in Response to Mechanical Confinement is Cell Type Dependent
Cited by: 10
Author(s): Mary T. Doolin, Thea S Ornstein, Kimberly M. Stroka
Software Mentions: 1
Published: over 5 years ago

10.3390/diagnostics10080524

Ciliary Feature Counter: A program for the Quantitative Assessment of Cilia to Diagnose Primary Ciliary Dyskinesia
Cited by: 3
Author(s): Andreia Pinto, Claire Hogg, Thomas Burgoyne
Software Mentions: 1
Published: over 4 years ago

10.5334/egems.273

Collaborating on Data, Science, and Infrastructure: The 20-Year Journey of the Cancer Research Network
Cited by: 6
Author(s): V. Paul Doria–Rose, Robert T. Greenlee, Diana S.M. Buist, Diana L. Miglioretti, Douglas A. Corley, Jeffrey S. Brown, Heather Clancy, Leah Tuzzio, Lisa M. Moy, Mark C. Hornbrook, Martin L. Brown, Debra P. Ritzwoller, Lawrence H. Kushi, Sarah M. Greene
Software Mentions: 1
Published: over 5 years ago

10.1111/ejn.14597

Cell‐type‐specific visualisation and biochemical isolation of endogenous synaptic proteins in mice
Cited by: 15
Author(s): Fei Zhu, Mark O. Collins, Johan Harmse, Jyoti S. Choudhary, Seth G. N. Grant, Noboru H. Komiyama
Software Mentions: 1
Published: about 5 years ago

10.3389/fncel.2020.626056

Neuronal and Synaptic Plasticity in the Visual Thalamus in Mouse Models of Glaucoma
Cited by: 16
Author(s): Matthew J. Van Hook, Corrine F. Monaco, Elizabeth R. Bierlein, JENNIE SMITH
Software Mentions: 1
Published: almost 4 years ago

10.1111/gcb.14795

Red Sea corals under Artificial Light Pollution at Night (ALAN) undergo oxidative stress and photosynthetic impairment
Cited by: 47
Author(s): Inbal Ayalon, Laura Fernandes de Barros Marangoni, Jennifer I. C. Benichou, Dror Avisar, Oren Levy
Software Mentions: 1
Published: over 5 years ago

10.1038/srep18483

Compact Wireless Microscope for In-Situ Time Course Study of Large Scale Cell Dynamics within an Incubator
Cited by: 24
Author(s): Di Jin, Dennis A. Wong, Junxiang Li, Zhongbing Luo, Yiran Guo, Bifeng Liu, Qiong Wu, Chih‐Ming Ho, Peng Fei
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01826-w

Role of Akt-independent mTORC1 and GSK3β signaling in sublethal NMDA-induced injury and the recovery of neuronal electrophysiology and survival
Cited by: 19
Author(s): Przemyslaw Swiatkowski, И. С. Николаева, Gaurav Kumar, Avery Zucco, Barbara F. Akum, Mihir V. Patel, Gabriella D’Arcangelo, Bonnie L. Firestein
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-16746-y

Spindle associated membrane protein 1 (Samp1) is required for the differentiation of muscle cells
Cited by: 5
Author(s): Mohammed Hakim Jafferali, Ricardo Figueroa, Mehedi Hasan, Einar Hallberg
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-27692-8

The role of calretinin-expressing granule cells in olfactory bulb functions and odor behavior
Cited by: 11
Author(s): Delphine Hardy, Sarah Malvaut, Vincent Breton-Provencher, Armen Saghatelyan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41036-0

Carbohydrate Metabolic Compensation Coupled to High Tolerance to Oxidative Stress in Ticks
Cited by: 7
Author(s): Bárbara Della Noce, Marcelle Vianna de Carvalho Uhl, Josias Alves Machado, Camila Fernanda Waltero, Leonardo Abreu, Renato Martins da Silva, Rodrigo Nunes da Fonseca, Cíntia Monteiro de Barros, Gabriela Alves Sabadin, Satoru Konnai, Itabajara da Silva Vaz, Kazuhiko Ohashi, Carlos Logullo
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-62648-x

Platelets disrupt vasculogenic mimicry by cancer cells
Cited by: 17
Author(s): Carmela Martini, Emma J. Thompson, Stephanie Hyslop, Michaelia P. Cockshell, Brian Dale, Lisa M. Ebert, Anthony E. Woods, Emma C. Josefsson, Claudine S. Bonder
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-85693-6

A dose-escalating toxicology study of the candidate biologic ELP-VEGF
Cited by: 4
Author(s): Jamarius P. Waller, Stephen P. Burke, Jason Engel, Alejandro Chade, Gene L. Bidwell
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-85631-6

Xeno-free cryopreservation of adherent retinal pigmented epithelium yields viable and functional cells in vitro and in vivo
Cited by: 7
Author(s): Britney O Pennington, Jeffrey K Bailey, Mohamed A. Faynus, Cassidy R. Hinman, Mitchell N Hee, Rory Ritts, Vignesh P. Nadar, Danhong Zhu, Debbie Mitra, Juan Carlos Martinez-Camarillo, Tai‐Chi Lin, Biju Thomas, David R. Hinton, Mark S. Humayun, Jane Lebkowski, Lincoln V. Johnson, Dennis O. Clegg
Software Mentions: 1
Published: almost 4 years ago

10.3390/s121115088

Power Impact of Loop Buffer Schemes for Biomedical Wireless Sensor Nodes
Cited by: 2
Author(s): Antonio Artés, José L. Ayala, Francky Catthoor
Software Mentions: 1
Published: about 12 years ago

10.3390/s20236896

Real-Time Plant Leaf Counting Using Deep Object Detection Networks
Cited by: 39
Author(s): Michael Buzzy, Vaishnavi Thesma, Mohammadreza Davoodi, Javad Mohammadpour Velni
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.11815

Modeling anti-IL-6 therapy using breast cancer patient-derived xenografts
Cited by: 4
Author(s): Beatriz Morancho, Mariano F. Zacarías Fluck, Antonio Esgueva, Cristina Bernadó-Morales, Serena Di Cosimo, Aleix Prat, Javier Cortés, Joaquı́n Arribas, Isabel T. Rubio
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.22932

Development of a reliable and accurate algorithm to quantify the tumor immune stroma (QTiS) across tumor types
Cited by: 18
Author(s): Rainer Christoph Miksch, Jihua Hao, Markus Bo Schoenberg, Katharina Dötzer, Friederike Schlüter, Maximilian Weniger, Shuai Yin, Steffen Ormanns, Jan G. D’Haese, Markus Guba, Jens Werner, Barbara Mayer, Alexandr V. Bazhin
Software Mentions: 1
Published: about 7 years ago

10.1007/s00401-016-1541-5

Cell therapy centered on IL-1Ra is neuroprotective in experimental stroke
Cited by: 62
Author(s): Bettina Hjelm Clausen, Kate Lykke Lambertsen, Frederik Dagnæs‐Hansen, Alicia Babcock, Christian Ulrich von Linstow, Michael Meldgaard, Bjarne Winther Kristensen, Tomas Deierborg, Bente Finsen
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu11051170

Food Composition Impacts the Accuracy of Wearable Devices When Estimating Energy Intake from Energy-Dense Food
Cited by: 2
Author(s): Giulia Lorenzoni, Daniele Bottigliengo, Danila Azzolina, Darío Gregori
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202429

Liraglutide preconditioning attenuates myocardial ischemia/ reperfusion injury via homer1 activation
Cited by: 4
Author(s): Xiangrong Cui, Hongping Liang, Chonghua Hao, Jianhua Xuan
Software Mentions: 1
Published: almost 4 years ago

10.3390/antiox9030244

Antioxidants Reduce Muscular Dystrophy in the dy2J/dy2J Mouse Model of Laminin α2 Chain-Deficient Muscular Dystrophy
Cited by: 7
Author(s): Vahid M. Harandi, Bernardo Moreira Soares Oliveira, Valérie Allamand, Ariana Friberg, Cibely C. Fontes-Oliveira, Madeleine Durbeej
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-015-0616-y

Learning-guided automatic three dimensional synapse quantification for drosophila neurons
Cited by: 7
Author(s): Jonathan William Sanders, Anil Kumar Singh, Gabriella R Sterne, Bing Yan, Jie Zhou
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-8-445

Computational prediction and experimental validation of Ciona intestinalis microRNA genes
Cited by: 26
Author(s): Trina M. Norden-Krichmar, Janette Holtz, Amy E. Pasquinelli, Terry Gaasterland
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2342-6-11

Semi-automated segmentation and quantification of adipose tissue in calf and thigh by MRI: a preliminary study in patients with monogenic metabolic syndrome
Cited by: 30
Author(s): Salam A. Al-Attar, Rebecca L. Pollex, John F. Robinson, Brooke A Miskie, Rhonda Walcarius, Brian K. Rutt, Robert A. Hegele
Software Mentions: 1
Published: over 18 years ago

10.1186/1756-0500-7-829

BamBam: genome sequence analysis tools for biologists
Cited by: 34
Author(s): Justin T. Page, Zachary Liechty, Mark D. Huynh, Joshua A. Udall
Software Mentions: 1
Published: almost 11 years ago

10.3390/bioengineering6020050

A Microcavity Array-Based 4D Cell Culture Platform
Cited by: 5
Author(s): Cordula Nies, Tobias Rubner, Hanna Lorig, Vera Colditz, Helen Seelmann, Andreas Müller, Eric Gottwald
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000768

USP30 sets a trigger threshold for PINK1–PARKIN amplification of mitochondrial ubiquitylation
Cited by: 62
Author(s): Emma V Rusilowicz‐Jones, Jane Jardine, Andreas Kallinos, Adán Pinto-Fernández, Franziska Guenther, Mariacarmela Giurrandino, Francesco G. Barone, Katy R McCarron, Christopher Burke, Alejandro D. Murad, Martínez Amador, Elena Marcassa, Malte Gersch, Alexandre J. Buckmelter, Katherine J. Kayser-Bricker, Frédéric Lamoliatte, Akshada Gajbhiye, Simon Davis, Hannah C. Scott, Emma J. Murphy, Katherine S. England, Heather Mortiboys, David Komander, Matthias Trost, Benedikt M. Kessler, Stephanos Ioannidis, Michael K. Ahlijanian, Sylvie Urbé, Michael J. Clague
Software Mentions: 1
Published: over 4 years ago

10.1186/s13024-018-0245-9

Tau oligomers mediate α-synuclein toxicity and can be targeted by immunotherapy
Cited by: 55
Author(s): Julia E. Gerson, Kathleen Farmer, Natalie Henson, Diana L. Castillo-Carranza, Mariana Carretero Murillo, Urmi Sengupta, Alan D.T. Barrett, Rakez Kayed
Software Mentions: 1
Published: almost 7 years ago

10.3390/v8070201

Infection Counter: Automated Quantification of in Vitro Virus Replication by Fluorescence Microscopy
Cited by: 20
Author(s): Siân Culley, Greg J. Towers, David L. Selwood, Ricardo Henriques, Joe Grove
Software Mentions: 1
Published: over 8 years ago

10.1186/1756-3305-5-122

A user-friendly software to easily count Anopheles egg batches
Cited by: 26
Author(s): Ali Mollahosseini, Marie Rossignol, Cédric Pennetier, Anna Cohuet, António dos Anjos, Fabrice Chandre, Hamid Reza Shahbazkia
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.10213

The influence of estrogen deficiency on the structural and mechanical properties of rat cortical bone
Cited by: 1
Author(s): Anna Shipov, Paul Zaslansky, H. Riesemeier, Gil Segev, Ayelet Atkins, Noga Kalish-Achrai, Stephen Weiner, Ron Shahar
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pntd.0002989

Presence of Antigen-Experienced T Cells with Low Grade of Differentiation and Proliferative Potential in Chronic Chagas Disease Myocarditis
Cited by: 28
Author(s): Rafael J. Argüello, Carlos Vigliano, Patricia Cabeza-Meckert, Rodolfo Viotti, Fernando Miguel Garelli, Liliana Favaloro, Roberto Favaloro, Rubén P. Laguens, Susana A. Laucella
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0190205

The effects of exercise on hypothalamic neurodegeneration of Alzheimer’s disease mouse model
Cited by: 60
Author(s): Khoa Do, Brenton T. Laing, Taylor Landry, Wyatt Bunner, Naderi Mersaud, Tomoko Matsubara, Pei-Xin Li, Yuan Yuan, Qun Lü, Huang Hu
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0133892

A Natural Combination Extract of Viscum album L. Containing Both Triterpene Acids and Lectins Is Highly Effective against AML In Vivo
Cited by: 39
Author(s): Catharina I. Delebinski, Monika Twardziok, Susann Kleinsimon, Florian Hoff, Katharina Mulsow, Jana Rolff, Sebastian Jäger, Angelika Eggert, Georg Seifert
Software Mentions: 1
Published: over 9 years ago

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