pypi: trinity | Projects | Ecosyste.ms: Papers

10.12688/wellcomeopenres.16430.2

Polysomal mRNA Association and Gene Expression in Trypanosoma brucei
Cited by: 0
Author(s): Michele Tinti, Anna Kelner-Mirôn, Lizzie J. Marriott, Michael A. J. Ferguson
Software Mentions: 11
Published: over 3 years ago

10.1111/eva.13120

Comparative transcriptomics of ice‐crawlers demonstrates cold specialization constrains niche evolution in a relict lineage
Cited by: 4
Author(s): Sean D. Schoville, Sabrina Simon, Ming Bai, Zachary T. Beethem, R. Yu. Dudko, Monika J. B. Eberhard, Paul B. Frandsen, Simon Küpper, Ryuichiro Machida, Max Verheij, Peter Willadsen, Xin Zhou, Benjamin Wipfler‍
Software Mentions: 8
Published: over 4 years ago

10.3390/genes10070514

Transcriptional Analysis of the Early Ripening of ‘Kyoho’ Grape in Response to the Treatment of Riboflavin
Cited by: 9
Author(s): Zhenguang Wang, Lili Guo, Xiao-Ru Ji, Yi‐He Yu, Guohai Zhang, Da‐Long Guo
Software Mentions: 6
Published: over 5 years ago

10.1111/1755-0998.13252

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Cited by: 84
Author(s): Valentina Peona, Mozes P. K. Blom, Luohao Xu, Reto Burri, Shawn Sullivan, Ignas Bunikis, Ivan Liachko, Tri Haryoko, Knud A. Jønsson, Qi Zhou, Martin Irestedt, Alexander Suh
Software Mentions: 6
Published: about 4 years ago

10.1093/femsec/fiaa016

Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil
Cited by: 25
Author(s): Toke Bang‐Andreasen, Muhammad Zohaib Anwar, Anders Lanzén, Rasmus Kjøller, Regin Rønn, Flemming Ekelund, Carsten Suhr Jacobsen
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.01195

Multi-Omics Characterization of the 4T1 Murine Mammary Gland Tumor Model
Cited by: 82
Author(s): Barbara Schrörs, Sebastian Boegel, Christian Albrecht, Thomas Bukur, Valesca Bukur, Christoph Holtsträter, Christoph Ritzel, Katja Manninen, Arbel D. Tadmor, Mathias Vormehr, Uğur Şahin, Martin Löwer
Software Mentions: 5
Published: over 4 years ago

10.1002/ps.6061

Toxicological and molecular profiling of insecticide resistance in a Brazilian strain of fall armyworm resistant to Bt Cry1 proteins
Cited by: 24
Author(s): Debora Boaventura, Benjamin Buer, Niklas Hamaekers, Frank Maiwald, Ralf Nauen
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-018-36840-z

Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas
Cited by: 28
Author(s): Susan K. Rathe, Flavia E. Popescu, James E. Johnson, Adrienne L. Watson, Tracy A. Marko, Branden S. Moriarity, John R. Ohlfest, David A. Largaespada
Software Mentions: 5
Published: almost 6 years ago

10.1111/imb.12513

Integrative transcriptomic and genomic analysis of odorant binding proteins and chemosensory proteins in aphids
Cited by: 45
Author(s): Q. Wang, Jing‐Jiang Zhou, J.-T. Liu, Huang Guixiu, Weina Xu, Qiaoqin Zhang, J.-L. Chen, Fengquan Liu, X.-C. Li, Siyi Gu
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0119027

Comparative Transcriptome Analysis of Anthurium “Albama” and Its Anthocyanin-Loss Mutant
Cited by: 17
Author(s): Zhiying Li, Jiabin Wang, Xuequan Zhang, Li Xu
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0109262

De Novo Assembly of the Common Bean Transcriptome Using Short Reads for the Discovery of Drought-Responsive Genes
Cited by: 48
Author(s): Jing Wu, Lanfen Wang, Long Li, Shumin Wang
Software Mentions: 4
Published: about 10 years ago

10.1002/ece3.6946

Genomic analysis of Asian honeybee populations in China reveals evolutionary relationships and adaptation to abiotic stress
Cited by: 6
Author(s): Peng Shi, Jun Zhou, Huali Song, Yujuan Wu, Lan Lan, Xiangyou Tang, Zhengang Ma, Charles R. Vossbrinck, Bettina Vossbrinck, Zeyang Zhou, Jianlong Xu
Software Mentions: 4
Published: about 4 years ago

10.1111/mec.14865

Species-complex diversification and host-plant associations in <i>Bemisia tabaci</i> : A plant-defence, detoxification perspective revealed by RNA-Seq analyses
Cited by: 37
Author(s): Osnat Malka, Diego Santos-García, Ester Feldmesser, Elad Sharon, Renate Krause‐Sakate, Hélène Delatte, Sharon van Brunschot, Mitulkumar V. Patel, Paul Visendi, Habibu Mugerwa, Susan Seal, John Colvin, Shai Morin
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-15-676

De novo transcriptome sequencing and digital gene expression analysis predict biosynthetic pathway of rhynchophylline and isorhynchophylline from Uncaria rhynchophylla, a non-model plant with potent anti-alzheimer’s properties
Cited by: 58
Author(s): Qianqian Guo, Xiaojun Ma, Shugen Wei, Deyou Qiu, Iain W. Wilson, Ping Wu, Qi Tang, Lijun Liu, Shoukun Dong, Zimin Wei
Software Mentions: 4
Published: over 10 years ago

10.1038/srep28702

Global transcriptome changes in perennial ryegrass during early infection by pink snow mould
Cited by: 12
Author(s): Mallikarjuna Rao Kovi, Mohamed Abdelhalim, Anil Kunapareddy, Åshild Ergon, Anne Marte Tronsmo, May Bente Brurberg, Ingerd Skow Hofgaard, Torben Asp, Odd Arne Rognli
Software Mentions: 3
Published: over 8 years ago

10.1111/pbi.13111

Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant
Cited by: 177
Author(s): Enhua Xia, Fangdong Li, Wei Tong, Penghui Li, Qiong Wu, Hongxing Zhao, Ruoheng Ge, Ruopei Li, Yeyun Li, Zhengzhu Zhang, Chaoling Wei, Xiaochun Wan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0161987

De Novo Assembly and Transcriptome Analysis of Bulb Onion (Allium cepa L.) during Cold Acclimation Using Contrasting Genotypes
Cited by: 25
Author(s): Jeongsukhyeon Han, Senthil Kumar Thamilarasan, Sathishkumar Natarajan, Jong-In Park, Mi-Young Chung, Ill–Sup Nou
Software Mentions: 3
Published: over 8 years ago

10.3389/fphys.2020.588450

Transcriptome Analysis and Knockdown of the Juvenile Hormone Esterase Gene Reveal Abnormal Feeding Behavior in the Sugarcane Giant Borer
Cited by: 5
Author(s): Daniel D. Noriega, Fabrício Barbosa Monteiro Arraes, José Dijair Antonino, Leonardo Lima Pepino Macedo, Fernando Fonseca, Roberto Coiti Togawa, Priscila Grynberg, Maria C. M. Silva, A. S. Negrisoli, Maria Fátima Grossi-de-Sá
Software Mentions: 3
Published: about 4 years ago

10.1186/s13068-019-1466-z

Heterozygous diploid structure of Amorphotheca resinae ZN1 contributes efficient biodetoxification on solid pretreated corn stover
Cited by: 21
Author(s): Xia Yi, Qinghai Gao, Lei Zhang, Xia Wang, Yanqing He, Fengxian Hu, Jian Zhang, Gen Zou, Shihui Yang, Zhihua Zhou, Jie Bao
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0187738

Characterization of the Lycium barbarum fruit transcriptome and development of EST-SSR markers
Cited by: 28
Author(s): Chunling Chen, Meilong Xu, Cuiping Wang, Ge‐Xia Qiao, Wenwen Wang, Zhuhua Tan, Tiantian Wu, Zhengsheng Zhang
Software Mentions: 3
Published: about 7 years ago

10.3390/ijms22073611

Analysis of Gene Expression Changes in Plants Grown in Salty Soil in Response to Inoculation with Halophilic Bacteria
Cited by: 2
Author(s): Ashley Miller, Brent L. Nielsen
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.23435

Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia
Cited by: 49
Author(s): Oliver Vöcking, Ioannis Kourtesis, Sharat Chandra Tumu, Harald Hausen
Software Mentions: 3
Published: over 7 years ago

10.1186/s12951-020-00591-9

Proteome interrogation using gold nanoprobes to identify targets of arctigenin in fish parasites
Cited by: 7
Author(s): Xiao Tu, Xiaoping Tan, Xiaozhou Qi, Aiguo Huang, Fei Ling, Gao‐Xue Wang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-015-1908-3

De novo sequencing and assembly analysis of transcriptome in the Sodom apple (Calotropis gigantea)
Cited by: 19
Author(s): Nkatha G. Muriira, Wei Xü, Alice Muchugi, Jianchu Xu, Aizhong Liu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-015-1701-3

Transciptomic and histological analysis of hepatopancreas, muscle and gill tissues of oriental river prawn (Macrobrachium nipponense) in response to chronic hypoxia
Cited by: 78
Author(s): Shengming Sun, Fujun Xuan, Hongtuo Fu, Jian Zhu, Xianping Ge, Zhenxin Gu
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-15-558

Transcriptome analysis gene expression in the liver of Coilia nasus during the stress response
Cited by: 34
Author(s): Fukuan Du, Gaosi Xu, Zhou Nie, Pao Xu, Ruobo Gu
Software Mentions: 2
Published: over 10 years ago

10.1111/mec.15115

Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflict
Cited by: 27
Author(s): Alison E. Wright, Thea F Rogers, Matteo Fumagalli, Christopher R. Cooney, Judith E. Mank
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0114238

De novo Sequencing, Assembly and Characterization of Antennal Transcriptome of Anomala corpulenta Motschulsky (Coleoptera: Rutelidae)
Cited by: 21
Author(s): Haoliang Chen, Lulu Lin, Minghui Xie, Guangling Zhang, Weihua Su
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0106476

A Global View of Transcriptome Dynamics during Sporisorium scitamineum Challenge in Sugarcane by RNA-seq
Cited by: 99
Author(s): Youxiong Que, Yachun Su, Jinlong Guo, Qibin Wu, Liping Xu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0177367

Transcriptome profiling of ontogeny in the acridid grasshopper Chorthippus biguttulus
Cited by: 4
Author(s): Emma L. Berdan, Jonas Finck, Paul R. Johnston, Isabelle Waurick, Camila J. Mazzoni, Frieder Mayer
Software Mentions: 2
Published: over 7 years ago

10.1016/j.dib.2017.12.051

RNA-seq data of control and powdery mildew pathogen (Golovinomyces orontii) treated transcriptomes of Helianthus niveus
Cited by: 2
Author(s): M. Sujatha, Kandasamy Ulaganathan, B. Divya Bhanu, Prashant Kumar Soni
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11060631

Gill Transcriptome Sequencing and De Novo Annotation of Acanthogobius ommaturus in Response to Salinity Stress
Cited by: 14
Author(s): Zhicheng Sun, Fangrui Lou, Yuan Zhang, Na Song
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-25845-3

De novo characterization of Phenacoccus solenopsis transcriptome and analysis of gene expression profiling during development and hormone biosynthesis
Cited by: 13
Author(s): Shashi Arya, Yogeshwar Vikram Dhar, Santosh Kumar Upadhyay, Mehar Hasan Asif, Praveen Chandra Verma
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-83507-3

Exploring the edible gum (galactomannan) biosynthesis and its regulation during pod developmental stages in clusterbean using comparative transcriptomic approach
Cited by: 4
Author(s): Sandhya Sharma, Anshika Tyagi, Harsha Srivastava, Gayatri Ramakrishna, Priya Sharma, Amitha Mithra Sevanthi, Amolkumar U. Solanke, Ramavtar Sharma, Nagendra Singh, T. R. Sharma, Kishor Gaikwad
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms19020373

Transcriptome Analysis of Kiwifruit in Response to Pseudomonas syringae pv. actinidiae Infection
Cited by: 27
Author(s): Tao Wang, Gang Wang, Zhemin Jia, Pan Delin, Jiyu Zhang, Xuehua Zhang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20102532

Transcriptome Analysis to Shed Light on the Molecular Mechanisms of Early Responses to Cadmium in Roots and Leaves of King Grass (Pennisetum americanum × P. purpureum)
Cited by: 21
Author(s): Junlong Zhao, Bo Xia, Yu Meng, Zhongfu Yang, Ling Pan, Man Zhou, Xinquan Zhang
Software Mentions: 2
Published: over 5 years ago

10.1038/srep22907

Integrated analysis of mRNA-seq and miRNA-seq in the liver of Pelteobagrus vachelli in response to hypoxia
Cited by: 65
Author(s): Guosong Zhang, Shaowu Yin, Jiayi Mao, Feng-Xia Liang, Cheng Zhao, Peng Li, Guoqin Zhou, Shuqiao Chen, Zhonglin Tang
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-015-0307-y

Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation
Cited by: 15
Author(s): Lei Fang, Daizhen Sun, Zhenyu Xu, Jing He, Qi Su, Xin Chen, Wee Chew, Jianhua Liu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep31835

Integrated application of transcriptomics and metabolomics yields insights into population-asynchronous ovary development in Coilia nasus
Cited by: 33
Author(s): Gaosi Xu, Fukuan Du, Yán Li, Zhou Nie, Pao Xu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-03563-6

Transcriptome profiling of Cucumis metuliferus infected by Meloidogyne incognita provides new insights into putative defense regulatory network in Cucurbitaceae
Cited by: 20
Author(s): Jian Ling, Zhenchuan Mao, Mingjuan Zhai, Feng Zeng, Yuhong Yang, Bingyan Xie
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-24452-6

Multifunctional activities of ERF109 as affected by salt stress in Arabidopsis
Cited by: 21
Author(s): Ahmed Bahieldin, Ahmed Atef, Sherif Edris, Nour O. Gadalla, Ahmed M. Ramadan, Sabah M. Hassan, Sanaa G. Al Attas, Magdy A. Al-Kordy, Abdulrahman S. M. Al-Hajar, Jamal S. M. Sabir, Mahmoud E Nasr, Gamal Osman, Fotouh M. El-Domyati
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-107

Characterization of the global transcriptome for Pyropia haitanensis(Bangiales, Rhodophyta) and development of cSSR markers
Cited by: 69
Author(s): Chaotian Xie, Bing Li, Yan Xu, Dehua Ji, Changsheng Chen
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12870-020-02775-9

Identification and characterization of regulatory pathways involved in early flowering in the new leaves of alfalfa (Medicago sativa L.) by transcriptome analysis
Cited by: 10
Author(s): Dongmei Ma, Bei Liu, Lingqiao Ge, Yinyin Weng, Xinmin Cao, Fang Liu, Peisheng Mao, Xiqing Ma
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-47041-7

Darkness-induced effects on gene expression in Cosmarium crenatum (Zygnematophyceae) from a polar habitat
Cited by: 5
Author(s): Florian Mundt, Dieter Hanelt, Lars Harms, S. Heinrich
Software Mentions: 1
Published: over 5 years ago

10.1186/s12915-020-00853-w

A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems
Cited by: 8
Author(s): Motoki Kayama, Junfeng Chen, Takashi Nakada, Yoshiki Nishimura, Toshiharu Shikanai, Tomio Azuma, Hideaki Miyashita, Shinichi Takaichi, Yuichiro Kashiyama, Ryoma Kamikawa
Software Mentions: 1
Published: over 4 years ago

10.3390/jof7060413

Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut
Cited by: 6
Author(s): Pooja Soni, Arun K. Pandey, Spurthi N. Nayak, Manish K. Pandey, Priya Tolani, Sarita Pandey, H. Sudini, Prasad Bajaj, Jake C. Fountain, Prashant Singam, Bao‐Zhu Guo, Rajeev K. Varshney
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0076718

Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome Virus Infection
Cited by: 63
Author(s): Shuxia Xue, Yichen Liu, Yichen Zhang, Yan Sun, Xin Geng, Jinsheng Sun
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0137450

Transcriptome Sequencing, De Novo Assembly and Differential Gene Expression Analysis of the Early Development of Acipenser baeri
Cited by: 14
Author(s): Wei Song, Keji Jiang, Fengying Zhang, Yuling Lin, Lan Ma
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0100423

Competitive Ability and Fitness Differences between Two Introduced Populations of the Invasive Whitefly Bemisia tabaci Q in China
Cited by: 30
Author(s): Yiwei Fang, Ling-yun Liu, Huali Zhang, Defeng Jiang, Dong Chu
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-021-07428-1

Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research
Cited by: 15
Author(s): Otto Seppälä, Jean‐Claude Walser, Teo Cereghetti, Katri Seppälä, Tiina Salo, Coen M. Adema
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0178424

Comparative transcription analysis of different Antirrhinum phyllotaxy nodes identifies major signal networks involved in vegetative-reproductive transition
Cited by: 2
Author(s): Dongliang Wang, Geyang Cao, Fang Peng, Lin Xiao, Beijiu Cheng
Software Mentions: 1
Published: over 7 years ago

Projects: pypi: trinity

Papers Mentioning trinity 51