Ecosyste.ms: Papers

10.1371/journal.pcbi.1000589

A Quick Guide for Developing Effective Bioinformatics Programming Skills
Cited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: over 14 years ago

10.1155/2018/4059018

Big Data Management for Healthcare Systems: Architecture, Requirements, and Implementation
Cited by: 62
Author(s): Naoual El Aboudi, Laïla Benhlima
Software Mentions: 6
Published: about 6 years ago

10.1186/s13742-016-0131-8

Gigwa—Genotype investigator for genome-wide analyses
Cited by: 18
Author(s): Guilhem Sempéré, Philippe Florian, Alexis Dereeper, Manuel Ruiz, Gautier Sarah, Pierre Larmande
Software Mentions: 5
Published: over 8 years ago

10.3390/s18041181

Hadoop Oriented Smart Cities Architecture
Cited by: 19
Author(s): Vlad Dıaconıța, Ana-Ramona Bologa, Răzvan Bologa
Software Mentions: 5
Published: over 6 years ago

10.3390/s17050977

Distributed Data Service for Data Management in Internet of Things Middleware
Cited by: 30
Author(s): Ruben Cruz Huacarpuma, Rafael T. de Sousa, Maristela Holanda, Robson de Oliveira Albuquerque, Luis Javier García Villalba, Tai-hoon Kim
Software Mentions: 4
Published: over 7 years ago

10.3390/s18114029

Sensor Fusion for Recognition of Activities of Daily Living
Cited by: 51
Author(s): Jiaxuan Wu, Yunfei Feng, Peng Sun
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0155461

SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data
Cited by: 69
Author(s): José Manuel Abuín, Juan C. Pichel, Tomás F. Pena, Jorge Amigo
Software Mentions: 4
Published: over 8 years ago

10.3390/s20113166

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring
Cited by: 15
Author(s): Adeyinka K. Akanbi, Muthoni Masinde
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0255562

An adaptive spark-based framework for querying large-scale NoSQL and relational databases
Cited by: 0
Author(s): Eman A. Khashan, Ali I. El-Desouky, Sally M. Elghamrawy
Software Mentions: 4
Published: about 3 years ago

10.3390/mi10050346

The Matrix KV Storage System Based on NVM Devices
Cited by: 3
Author(s): Tao Cai, Fuli Chen, Qing He, Dejiao Niu, Jie Wang
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giy036

Field of genes: using Apache Kafka as a bioinformatic data repository
Cited by: 10
Author(s): Brendan Lawlor, Richard Lynch, Micheál Mac Aogáin, Paul Walsh
Software Mentions: 3
Published: over 6 years ago

10.3390/healthcare9081016

Development of a System for Storing and Executing Bio-Signal Analysis Algorithms Developed in Different Languages
Cited by: 0
Author(s): Moon-Il Joo, Satyabrata Aich, Hee Cheol Kim
Software Mentions: 3
Published: about 3 years ago

10.1155/2014/712826

Big Data: Survey, Technologies, Opportunities, and Challenges
Cited by: 304
Author(s): Nawsher Khan, Ibrar Yaqoob, Mohamed Hashem, Zakira Inayat, Waleed Kamaleldin Mahmoud Ali, Muhammad Mansoor Alam, Muhammad Shiraz, Abdullah Gani
Software Mentions: 3
Published: over 10 years ago

10.1186/gm461

Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy
Cited by: 134
Author(s): James R. Lupski, Claudia Gonzaga‐Jauregui, Yaping Yang, Matthew N. Bainbridge, Shalini N. Jhangiani, Christian Buhay, Christie Kovar, Min Wang, Alicia Hawes, Jeffrey G. Reid, Christine M. Eng, Donna M. Muzny, Richard A. Gibbs
Software Mentions: 3
Published: over 11 years ago

10.7717/peerj-cs.488

Artificial intelligence approaches and mechanisms for big data analytics: a systematic study
Cited by: 25
Author(s): Amir Masoud Rahmani, Elham Azhir, Saqib Ali, Mokhtar Mohammadi, Omed Hassan Ahmed, Marwan Yassin Ghafour, Sarkar Hasan Ahmed, Mehdi Hosseinzadeh
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-019-2993-0

The MG-RAST API explorer: an on-ramp for RESTful query composition
Cited by: 8
Author(s): Tobias Paczian, W. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj-cs.297

Data in the time of COVID-19: a general methodology to select and secure a NoSQL DBMS for medical data
Cited by: 9
Author(s): Kamal A. ElDahshan, Abd Allah A. AlHabshy, Gaber E. Abutaleb
Software Mentions: 3
Published: about 4 years ago

10.7717/peerj-cs.634

Automatic configuration of the Cassandra database using irace
Cited by: 2
Author(s): Moisés Silva-Muñoz, Alberto Franzin, Hugues Bersini
Software Mentions: 3
Published: about 3 years ago

10.1186/s12859-016-0904-1

GenAp: a distributed SQL interface for genomic data
Cited by: 13
Author(s): Christos Kozanitis, David A. Patterson
Software Mentions: 2
Published: over 8 years ago

10.1002/mgg3.237

A potential founder variant in<i>CARMIL2/RLTPR</i>in three Norwegian families with warts, molluscum contagiosum, and T-cell dysfunction
Cited by: 52
Author(s): Hanne Sørmo Sorte, Liv Osnes, Børre Fevang, Pål Aukrust, Hans Christian Erichsen, Paul Hoff Backe, Tore G. Abrahamsen, Ole Bjørn Kittang, Torstein Øverland, Shalini N. Jhangiani, Donna M. Muzny, Magnus Dehli Vigeland, Pubudu Samarakoon, Tomasz Gambin, Zeynep H. Coban Akdemir, Richard A. Gibbs, Olaug K. Rødningen, Robert Lyle, James R. Lupski, Asbjørg Stray-Pedersen
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj-cs.489

Log-based software monitoring: a systematic mapping study
Cited by: 7
Author(s): Jeanderson Cândido, Maurício Aniche, Arie van Deursen
Software Mentions: 2
Published: over 3 years ago

10.3390/s19143033

Blockchain-Based Scalable and Tamper-Evident Solution for Registering Energy Data
Cited by: 42
Author(s): Claudia Pop, Claudia Antal, Tudor Cioara, Ionut Anghel, David Sera, Ioan Salomie, Giuseppe Raveduto, Denisa Ziu, Vincenzo Croce, Massimo Bertoncini
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-S8-S3

High dimensional biological data retrieval optimization with NoSQL technology
Cited by: 32
Author(s): Shicai Wang, Ioannis Pandis, Chao Wu, Sijin He, David Johnson, Ibrahim Emam, Florian Guitton, Yike Guo
Software Mentions: 2
Published: almost 10 years ago

10.3390/s21124035

Graph Representation Integrating Signals for Emotion Recognition and Analysis
Cited by: 2
Author(s): Teresa Zawadzka, Tomasz Wierciński, Grzegorz Meller, Mateusz Rock, Robert Zwierzycki, Michał R. Wróbel
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0110740

Whole Exome Sequencing Identifies Novel Genes for Fetal Hemoglobin Response to Hydroxyurea in Children with Sickle Cell Anemia
Cited by: 28
Author(s): Vivien A. Sheehan, Jacy R. Crosby, Aniko Sabo, Nicole A. Mortier, Thad A. Howard, Donna M. Muzny, Shannon Dugan-Perez, Banu Aygün, Kerri Nottage, Eric Boerwinkle, Richard A. Gibbs, Russell E. Ware, Jonathan M. Flanagan
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0240461

Automated pipeline framework for processing of large-scale building energy time series data
Cited by: 10
Author(s): Arash Khalilnejad, Ahmad Maroof Karimi, Shreyas Kamath, Rojiar Haddadian, Roger H. French, Alexis R. Abramson
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-11-S12-S1

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
Cited by: 371
Author(s): Ron Taylor
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0116781

Enabling Big Geoscience Data Analytics with a Cloud-Based, MapReduce-Enabled and Service-Oriented Workflow Framework
Cited by: 37
Author(s): Zhenlong Li, Chaowei Yang, Baoxuan Jin, Manzhu Yu, Kai Liu, Min Sun, Zhan Matthew
Software Mentions: 2
Published: over 9 years ago

10.1007/978-3-030-58858-8_13

Diminuendo! Tactics in Support of FaaS Migrations
Cited by: 4
Author(s): Sebastian Werner, Jörn Kuhlenkamp, Frank Pallas, Niklas Anders, Nebi Mucaj, Olesia Tsaplina, Christian Martin Schmidt, Kann Yildirim
Software Mentions: 2
Published: over 4 years ago

10.1155/2015/254685

Novel Computational Technologies for Next-Generation Sequencing Data Analysis and Their Applications
Cited by: 3
Author(s): Chuan Yi Tang, Che Lun Hung, Huiru Zheng, Chun Yuan Lin, Hai Jiang
Software Mentions: 1
Published: over 9 years ago

10.1007/s10479-021-04077-1

Exploring big data-driven innovation in the manufacturing sector: evidence from UK firms
Cited by: 26
Author(s): Mujahid Mohiuddin Babu, Mahfuzur Rahman, Ashraful Alam, Bidit Lal Dey
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-15-30

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline
Cited by: 195
Author(s): Jeffrey G. Reid, Andrew Carroll, Narayanan Veeraraghavan, Mahmoud Dahdouli, Andreas Sundquist, Adam C. English, Matthew N. Bainbridge, Simon White, William Salerno, Christian Buhay, Fuli Yu, Donna M. Muzny, Richard F. Daly, Geoff M. Duyk, Richard A. Gibbs, Eric Boerwinkle
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-019-5559-7

mGAP: the macaque genotype and phenotype resource, a framework for accessing and interpreting macaque variant data, and identifying new models of human disease
Cited by: 22
Author(s): Benjamin N. Bimber, Melissa Y. Yan, Samuel M. Peterson, Betsy Ferguson
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2350-15-64

Structural variation and missense mutation in SBDSassociated with Shwachman-Diamond syndrome
Cited by: 9
Author(s): Claudia M.B. Carvalho, Luciana W. Zuccherato, Christopher L. Williams, Nicholas J. Neill, David R. Murdock, Matthew N. Bainbridge, Shalini N. Jhangiani, Donna M. Muzny, Richard A. Gibbs, Wan Ip, R. Paul Guillerman, James R. Lupski, Alison A. Bertuch
Software Mentions: 1
Published: over 10 years ago

10.3390/mi11121075

A New Embedded Key–Value Store for NVM Device Simulator
Cited by: 1
Author(s): Tao Cai, Qing He, Dejiao Niu, Fuli Chen, Jie Wang, Lei Li
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12943-015-0416-z

Downregulation of dystroglycan glycosyltransferases LARGE2 and ISPD associate with increased mortality in clear cell renal cell carcinoma
Cited by: 18
Author(s): Michael R. Miller, Deqin Ma, James Schappet, Patrick Breheny, Sarah L. Mott, Nadine Bannick, Eric J. Askeland, James A. Brown, Michael D. Henry
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1006905

Clinically severe CACNA1A alleles affect synaptic function and neurodegeneration differentially
Cited by: 63
Author(s): Xi Luo, Jill A. Rosenfeld, Shinya Yamamoto, Tamar Harel, Zhuang Zuo, Melissa Hall, Klaas J. Wierenga, Matthew Pastore, Dennis Bartholomew, Mauricio R. Delgado, Joshua Rotenberg, Richard A. Lewis, Lisa Emrick, Carlos A. Bacino, Mohammad K. Eldomery, Zeynep Coban Akdemir, Fan Xia, Yaping Yang, Seema R. Lalani, Timothy Lotze, James R. Lupski, Brendan Lee, Hugo J. Bellen, Michael F. Wangler
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1007504

Mutation in the intracellular chloride channel CLCC1 associated with autosomal recessive retinitis pigmentosa
Cited by: 23
Author(s): Liang-In Lin, Xiaodong Jiao, Ilaria D’Atri, Fumihito Ono, Ralph Nelson, Chi Chao Chan, Naoki Nakaya, Zhiwei Ma, Yuanyuan Ma, Xiaoying Cai, Longhua Zhang, Siying Lin, Abdul Hameed, Barry A. Chioza, Holly Hardy, Gavin Arno, Sarah Hull, Muhammad Imran Khan, James Fasham, Gaurav V. Harlalka, Michel Michaelides, Anthony T. Moore, Zeynep H. Coban Akdemir, Shalini N. Jhangiani, James R. Lupski, Frans P.M. Cremers, Raheel Qamar, Ahmed Salman, John K. Chilton, Jay E. Self, Radha Ayyagari, Firoz Kabir, Muhammad Asif Naeem, Muhammad Ali, Javed Akram, Paul A. Sieving, Sheikh Riazuddin, Emma L. Baple, Sheikh Riazuddin, Andrew H. Crosby, J. Fielding Hejtmancik
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0162721

SparkText: Biomedical Text Mining on Big Data Framework
Cited by: 31
Author(s): Zhan Ye, Ahmad P. Tafti, Karen Y. He, Kai Wang, Max M. He
Software Mentions: 1
Published: almost 8 years ago

10.1007/978-3-030-53288-8_13

Semantics, Specification, and Bounded Verification of Concurrent Libraries in Replicated Systems
Cited by: 3
Author(s): Kartik Nagar, Prasita Mukherjee, Suresh Jagannathan
Software Mentions: 1
Published: over 4 years ago

10.3390/diseases6040089

A Magnetoencephalographic/Encephalographic (MEG/EEG) Brain-Computer Interface Driver for Interactive iOS Mobile Videogame Applications Utilizing the Hadoop Ecosystem, MongoDB, and Cassandra NoSQL Databases
Cited by: 5
Author(s): Wilbert A. McClay
Software Mentions: 1
Published: almost 6 years ago

10.3390/e22121352

Application of Dynamic Fragmentation Methods in Multimedia Databases: A Review
Cited by: 8
Author(s): Felipe Castro-Medina, Lisbeth Rodríguez-Mazahua, Asdrúbal López-Chau, Jair Cervantes, Giner Alor-Hernández, Isaac Machorro-Cano
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes11080853

Next Generation Sequencing of 134 Children with Autism Spectrum Disorder and Regression
Cited by: 13
Author(s): Jiani C. Yin, Chun-An Chun, N. N. Zavadenko, Natalia L. Pechatnikova, O. Yu. Naumova, Harshavardhan Doddapaneni, Jianhong Hu, Donna M. Muzny, Christian P. Schaaf, Elena L. Grigorenko
Software Mentions: 1
Published: about 4 years ago

10.1186/s13073-015-0171-1

Secondary findings and carrier test frequencies in a large multiethnic sample
Cited by: 42
Author(s): Tomasz Gambin, Shalini N. Jhangiani, Jennifer E. Below, Ian Campbell, Wojciech Wiszniewski, Donna M. Muzny, Jeffrey Staples, Alanna C. Morrison, Matthew N. Bainbridge, Samantha Penney, Amy L. McGuire, Richard A. Gibbs, James R. Lupski, Eric Boerwinkle
Software Mentions: 1
Published: over 9 years ago

10.1155/2014/967294

Database Constraints Applied to Metabolic Pathway Reconstruction Tools
Cited by: 1
Author(s): Jordi Vilaplana, Francesc Solsona, Ivan Teixidó, Anabel Usié, Hiren Karathia, Rui Alves, Jordi Mateo
Software Mentions: 1
Published: over 10 years ago

10.3390/s16050599

Traffic Congestion Detection System through Connected Vehicles and Big Data
Cited by: 67
Author(s): Néstor Cárdenas-Benítez, Raúl Aquino-Santos, Pedro Magaña-Espinoza, José Carlos Aguilar-Velazco, Arthur Edwards-Block, Aldo Medina Cass
Software Mentions: 1
Published: over 8 years ago

10.3390/s16122126

Performance Prediction of a MongoDB-Based Traceability System in Smart Factory Supply Chains
Cited by: 26
Author(s): Yong-Shin Kang, Il-Ha Park, Sekyoung Youm
Software Mentions: 1
Published: almost 8 years ago

10.3390/s18071984

Road Anomalies Detection System Evaluation
Cited by: 27
Author(s): Nuno Silva, Vaibhav Shah, João Soares, Helena Rodrigues
Software Mentions: 1
Published: about 6 years ago

10.3390/s20226538

PatientDataChain: A Blockchain-Based Approach to Integrate Personal Health Records
Cited by: 32
Author(s): Alexandra Cernian, Bogdan Țigănoaia, Ioan Ștefan Sacală, Adrian Pavel, Alin Iftemi
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21072353

Big Data Warehouse for Healthcare-Sensitive Data Applications
Cited by: 10
Author(s): Arsalan Shahid, Thien-An Ngoc Nguyen, Tahar Kechadi
Software Mentions: 1
Published: over 3 years ago

10.1186/s40064-016-3128-y

Social customer relationship management: taking advantage of Web 2.0 and Big Data technologies
Cited by: 49
Author(s): Sergio Orenga-Roglá, Ricardo Chalmeta
Software Mentions: 1
Published: about 8 years ago

10.1155/2015/502795

Evaluating the Cassandra NoSQL Database Approach for Genomic Data Persistency
Cited by: 16
Author(s): Rodrigo Aniceto, Rene Xavier, Valéria Monteze Guimarães, Fernanda Hondo, Maristela Holanda, Maria Emília M. T. Walter, Sérgio Lifschitz
Software Mentions: 1
Published: over 9 years ago