Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: CRADLE
Correct Read Counts and Analysis of Differently Expressed Regions
Papers that mentioned: 17
pypi: shape
2D shapes abstraction
Papers that mentioned: 17
pypi: tuxedo
Python3 bindings for writing Oracle Tuxedo clients and servers
Papers that mentioned: 17
pypi: rapa
Robust Automtated Parsimony Analysis
Papers that mentioned: 17
pypi: shapeit
It's Shapely with projections and some other conveniences!
Papers that mentioned: 17
pypi: PyDSTool
Python dynamical systems simulation and modeling
Papers that mentioned: 17
pypi: fr
A program to print resources in delicious flavors.
Papers that mentioned: 17
pypi: space
UNKNOWN
Papers that mentioned: 17
pypi: Compositions
Contains composition of useful structures
Papers that mentioned: 17
pypi: NucleoATAC
python package for calling nucleosomes with ATAC-Seq
Papers that mentioned: 17
pypi: bgzip
Utilities working with blocked gzip streams.
Papers that mentioned: 16
pypi: SCM
Gui for EPSC model and inverse analysis
Papers that mentioned: 16
pypi: cmake
CMake is an open-source, cross-platform family of tools designed to build, test and package software
Papers that mentioned: 16
pypi: tk
TensorKit is a deep learning helper between Python and C++.
Papers that mentioned: 16
pypi: claviger
Synchronizes remote SSH authorized_keys
Papers that mentioned: 16
pypi: exe

Papers that mentioned: 16
pypi: pdp
Build fast data processing pipelines easily
Papers that mentioned: 16
pypi: circlator
circlator: a tool to circularise genome assemblies
Papers that mentioned: 16
pypi: dtw
Python DTW Module
Papers that mentioned: 16
pypi: hdbscan
Clustering based on density with variable density clusters
Papers that mentioned: 16
pypi: signal
Send SMS messages via ADB and your Android phone. Comes with a CLI.
Papers that mentioned: 16
pypi: fib
a GUI for fibnacci sequence
Papers that mentioned: 16
pypi: Safe
Is your password safe?
Papers that mentioned: 16
pypi: tile
Syntax and config generator for tiling window managers
Papers that mentioned: 16
pypi: CasFinder
A small example package
Papers that mentioned: 16
pypi: Toucan
A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and more
Papers that mentioned: 16
pypi: igv
Jupyter extension for embedding the genome visualation igv.js in a notebook
Papers that mentioned: 16
pypi: imgaug
Image augmentation library for deep neural networks
Papers that mentioned: 16
pypi: Quotient
Divmod Quotient is a messaging platform developed as an Offering for Divmod Mantissa.
Papers that mentioned: 16
pypi: Mako
A super-fast templating language that borrows the best ideas from the existing templating languages.
Papers that mentioned: 16
pypi: autopilot
Helper to create and distribute Python packages
Papers that mentioned: 16
pypi: spp
My Simple Protocol Parser For Python, Built For Speed
Papers that mentioned: 16
pypi: j5
j5 Robotics Framework
Papers that mentioned: 16
pypi: ERP
Resource Planning System
Papers that mentioned: 16
pypi: D2R
A new statistic for efficient detection of repetitive sequences
Papers that mentioned: 16
pypi: ai
Ai lib.
Papers that mentioned: 16
pypi: Clarify
A library for scraping and parsing election results from jurisdictions using Clarity elections systems.
Papers that mentioned: 16
pypi: join
SQL-style joins for iterables.
Papers that mentioned: 16
pypi: d
Documentation generation that won't make you tear your hair out.
Papers that mentioned: 16
pypi: Jinja2
A very fast and expressive template engine.
Papers that mentioned: 16
pypi: STEME
STEME: an accurate efficient motif finder for large data sets.
Papers that mentioned: 16
pypi: DuctApe
Analyzing and linking genomics and phenomics experiments
Papers that mentioned: 16
pypi: DAG
An implementation of a directed acyclic graph.
Papers that mentioned: 16
pypi: CCC
Cloud Custom Connections
Papers that mentioned: 16
pypi: pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
Papers that mentioned: 16
pypi: greedy
Greedy (topological) coloring for GeoPandas
Papers that mentioned: 16
pypi: summit
Tools for optimizing chemical processes
Papers that mentioned: 16
pypi: Sparks
A CLI tool that creates and updates project folders from templates to spark faster project bootstrapping.
Papers that mentioned: 16
pypi: pytest
pytest: simple powerful testing with Python
Papers that mentioned: 16
pypi: Shotgun
Shotgun package
Papers that mentioned: 16
pypi: rosetta
Tools, wrappers, etc... for data science with a concentration on text processing
Papers that mentioned: 16
pypi: AFE
Accelerometer Feature Extractor
Papers that mentioned: 16
pypi: forest
Forest
Papers that mentioned: 16
pypi: pcr
Python 3 Cryptography Toolkit
Papers that mentioned: 16
pypi: CROC
A package for calculating ROC curves and Concentrated ROC (CROC) curves.
Papers that mentioned: 16
pypi: Student
student information package
Papers that mentioned: 16
pypi: Pyro
distributed object middleware for Python (IPC/RPC), version 3.x
Papers that mentioned: 16
pypi: edge
Python bindings for Directed Edge's API
Papers that mentioned: 16
pypi: Satellite
A user interface to ThunderStorm library for ElectroStatic-Discharge (ESD) Transmission Line Pulse (TLP) measurement-data analysis
Papers that mentioned: 16
pypi: Quasar
Quasar is a collection of data analysis toolboxes extending the Orange suite.
Papers that mentioned: 16
pypi: Pyomo
Pyomo: Python Optimization Modeling Objects
Papers that mentioned: 15
pypi: fastaq
fastAQ is a very and super lightweight package for working with FASTA/FASTQ sequences
Papers that mentioned: 15
pypi: MetaLab
MetaLab
Papers that mentioned: 15
pypi: GEMA
A library to build and study Self-Organizing-Maps
Papers that mentioned: 15
pypi: nstruct
Define complicate C/C++ structs in Python to parse/pack them from/to raw bytes
Papers that mentioned: 15
pypi: odyssey
A Multi-SCM Multi-Repository Workspace Management Framework
Papers that mentioned: 15
pypi: mcr

Papers that mentioned: 15
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: deblur
Deblur
Papers that mentioned: 15
pypi: Elixir
Declarative Mapper for SQLAlchemy
Papers that mentioned: 15
pypi: PyWavelets
PyWavelets, wavelet transform module
Papers that mentioned: 15
pypi: propka
Heuristic pKa calculations with ligands
Papers that mentioned: 15
pypi: skygrid
The SkyGrid Python SDK
Papers that mentioned: 15
pypi: mumin
Seamlessly build the MuMiN dataset.
Papers that mentioned: 15
pypi: pop
The Plugin Oriented Programming System
Papers that mentioned: 15
pypi: algebra
Algebraic structures
Papers that mentioned: 15
pypi: Mantis
A Minimalist ORM for Python
Papers that mentioned: 15
pypi: box
Papers that mentioned: 15
pypi: piano
CMS built using Pyramid and MongoDB
Papers that mentioned: 15
pypi: svm
Version manager for Apache Spark
Papers that mentioned: 15
pypi: scape
a framework for raspberry pi developing
Papers that mentioned: 15
pypi: medaka
Neural network sequence error correction.
Papers that mentioned: 15
pypi: nibabel
Access a multitude of neuroimaging data formats
Papers that mentioned: 15
pypi: pantomime
MIME type normalisation and labels.
Papers that mentioned: 15
pypi: HierCC
Hierarchical Clustering of cgMLST profiles
Papers that mentioned: 15
pypi: connectivity
Library containing Server and Client for transferring messages and files via TCP
Papers that mentioned: 15
pypi: Therapy
Toy blog software using Haus on CouchDB.
Papers that mentioned: 15
pypi: genesis
Implementation of FreeSWITCH Event Socket protocol with asyncio
Papers that mentioned: 15
pypi: SloppyCell

Papers that mentioned: 15
pypi: ALM
ALM Model in Python
Papers that mentioned: 15
pypi: quantity
Unit-safe computations with quantities (including money)
Papers that mentioned: 15
pypi: a
Python Distribution Utilities
Papers that mentioned: 15
pypi: lda
Topic modeling with latent Dirichlet allocation
Papers that mentioned: 15
pypi: ATS
安卓手机自动化测试驱动包.
Papers that mentioned: 15
pypi: 16

Papers that mentioned: 15
pypi: csv
Fast CSV Parser for Python
Papers that mentioned: 15
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
pypi: IGC

Papers that mentioned: 15
pypi: gtable
A fast table-like container for data analytics
Papers that mentioned: 15
pypi: move
Moves revision-controlled files interactively in an editor.
Papers that mentioned: 15