Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: nstruct

https://packages.ecosyste.ms/registries/pypi.org/packages/nstruct

Define complicate C/C++ structs in Python to parse/pack them from/to raw bytes
15 versions
Latest release: about 6 years ago
1 dependent package
141 downloads last month

Papers Mentioning nstruct 15

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants
Cited by: 11
Author(s): Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce
Software Mentions: 10
Published: about 3 years ago

10.1371/journal.pone.0023947

Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction
Cited by: 19
Author(s): Christopher S. Poultney, Glenn L. Butterfoss, Michelle Gutwein, Kevin Drew, David Gresham, Kristin C. Gunsalus, Dennis Shasha, Richard Bonneau
Software Mentions: 8
Published: over 13 years ago

10.1371/journal.pone.0073411

Cross-Link Guided Molecular Modeling with ROSETTA
Cited by: 146
Author(s): Abdullah Kahraman, Franz Herzog, Alexander Leitner, George Rosenberger, Ruedi Aebersold, Lars Malmström
Software Mentions: 5
Published: about 11 years ago

10.1101/2020.12.05.409821

Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures
Cited by: 6
Author(s): Martina Zafferani, Christina Haddad, Le Luo, Jesse Davila‐Calderon, Liang Yuan-Chiu, Christian Shema Mugisha, Adeline G. Monaghan, Andrew Kennedy, Joseph D. Yesselman, Robert R Gifford, Andrew W. Tai, Sebla B. Kutluay, Meiling Li, Gary Brewer, Blanton S. Tolbert, Amanda E. Hargrove
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0022060

Modeling Disordered Regions in Proteins Using Rosetta
Cited by: 26
Author(s): Ray Yu Ruei Wang, Yanping Han, Kristina Krassovsky, William Sheffler, Michael D. Tyka, David Baker
Software Mentions: 3
Published: over 13 years ago

10.3390/ijms21155476

A Structural Model for Bax∆2-Mediated Activation of Caspase 8-Dependent Apoptosis
Cited by: 2
Author(s): Bing Xie, Qi Yao, Jialing Xiang, David D. L. Minh
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0064363

Alternative Computational Protocols for Supercharging Protein Surfaces for Reversible Unfolding and Retention of Stability
Cited by: 65
Author(s): Bryan S. Der, Christien Kluwe, Aleksandr E. Miklos, Ron Jacak, Sergey Lyskov, Jeffrey J. Gray, George Georgiou, Andrew D. Ellington, Brian Kuhlman
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0164905

Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein
Cited by: 14
Author(s): Eleisha L. Jackson, Scott R. Spielman, Claus O. Wilke
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0018934

Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
Cited by: 244
Author(s): Barak Raveh, Nir London, Lior Zimmerman, Ora Schueler‐Furman
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0232266

Molecular interactions between monoclonal oligomer-specific antibody 5E3 and its amyloid beta cognates
Cited by: 0
Author(s): Massih Khorvash, Nick Blinov, Carol L. Ladner-Keay, Jie Lu, Judith M. Silverman, Ebrima Gibbs, Yu Tian Wang, Andriy Kovalenko, David S. Wishart, Neil R. Cashman
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0044967

When the Lowest Energy Does Not Induce Native Structures: Parallel Minimization of Multi-Energy Values by Hybridizing Searching Intelligences
Cited by: 5
Author(s): Qiang Lü, Xiaoyan Xia, Rong Chen, Dajun Miao, Sha-Sha Chen, Lijun Quan, Haiou Li
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2091-14-9

Side chain requirements for affinity and specificity in D5, an HIV-1 antibody derived from the VH1-69 germline segment
Cited by: 3
Author(s): A. Keith Stewart, Joseph S. Harrison, Lauren K. Regula, Jonathan R. Lai
Software Mentions: 1
Published: over 11 years ago