Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: bgzip

https://packages.ecosyste.ms/registries/pypi.org/packages/bgzip

Utilities working with blocked gzip streams.
12 versions
Latest release: over 3 years ago
3 dependent packages
6,418 downloads last month

Papers Mentioning bgzip 16

Evaluation of whole-genome DNA methylation sequencing library preparation protocols
Cited by: 18
Author(s): Jacob Morrison, Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou, David Chesla, Larissa L. Rossell, Emily J. Siegwald, Marie Adams, Hui Shen
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-018-4835-2

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)
Cited by: 15
Author(s): Julien Richard Albert, Takao Koike, Hamid Younesy, Iain Thompson, Aaron B. Bogutz, Mehdi Karimi, Matthew C. Lorincz
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-018-5264-y

Helmsman: fast and efficient mutation signature analysis for massive sequencing datasets
Cited by: 18
Author(s): Jedidiah Carlson, Jun Z. Li, Sebastian Zöllner
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0252207

Genomic diversity of 39 samples of Pyropia species grown in Japan
Cited by: 4
Author(s): Yukio Nagano, Kei Kimura, Genta Kobayashi, Yoshio Kawamura
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2020.591093

NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
Cited by: 8
Author(s): David Dylus, Trestan Pillonel, Onya Opota, Daniel Wüthrich, Helena M. B. Seth-Smith, Adrian Egli, Stefano Leo, Vladimir Lazarević, Jacques Schrenzel, Sacha Laurent, Claire Bertelli, Dominique Blanc, Stefan Neuenschwander, Alban Ramette, Laurent Falquet, Frank Imkamp, Peter M. Keller, André Kahles, Simone Oberhaensli, Valérie Barbié, Christophe Dessimoz, Gilbert Greub, Aitana Lebrand
Software Mentions: 6
Published: almost 4 years ago

10.1093/gigascience/giz110

Evaluation of computational genotyping of structural variation for clinical diagnoses
Cited by: 34
Author(s): Varuna Chander, Richard A. Gibbs, Fritz J. Sedlazeck
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-14-356

Processing genome scale tabular data with wormtable
Cited by: 11
Author(s): Jerome Kelleher, Rob W. Ness, Daniel L. Halligan
Software Mentions: 3
Published: almost 11 years ago

10.1093/gigascience/giab007

HTSlib: C library for reading/writing high-throughput sequencing data
Cited by: 147
Author(s): James K. Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas M. Keane, Robert M. Davies
Software Mentions: 2
Published: over 3 years ago

10.1093/bioinformatics/btaa290

genozip: a fast and efficient compression tool for VCF files
Cited by: 12
Author(s): Divon Mordechai Lan, Raymond Tobler, Yassine Souilmi, Bastien Llamas
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0181604

Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics
Cited by: 25
Author(s): Ayal B. Gussow, Brett Copeland, Ryan S. Dhindsa, Quanli Wang, Slavé Petrovski, William H. Majoros, Andrew S. Allen, David B. Goldstein
Software Mentions: 1
Published: about 7 years ago

10.1093/bioinformatics/btaa1004

Sparse Project VCF: efficient encoding of population genotype matrices
Cited by: 1
Author(s): Michael Lin, Xiaodong Bai, William Salerno, Jeffrey G. Reid
Software Mentions: 1
Published: almost 4 years ago

10.1186/1756-0500-5-31

VPA: an R tool for analyzing sequencing variants with user-specified frequency pattern
Cited by: 0
Author(s): Qiang Hu, Dan Wang, Yan Li, Hua Zhao, Song Liu
Software Mentions: 1
Published: over 12 years ago

10.1534/g3.114.013482

The Genome of the Chicken DT40 Bursal Lymphoma Cell Line
Cited by: 24
Author(s): J. Molnár, Ádám Póti, Orsolya Pipek, Marcin Krzystanek, Nnennaya Kanu, Charles Swanton, Gábor Tusnády, Zoltán Szállási, István Csabai, Dávid Szűts
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13059-016-0973-5

Vcfanno: fast, flexible annotation of genetic variants
Cited by: 130
Author(s): Brent S. Pedersen, Ryan M. Layer, Aaron R. Quinlan
Software Mentions: 1
Published: over 8 years ago

10.1186/s12920-017-0297-7

Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory
Cited by: 4
Author(s): П. М. Пономаренко, Alex Ryutov, Dennis T. Maglinte, Ancha Baranova, Tatiana V. Tatarinova, Xiaowu Gai
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12859-015-0603-3

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis
Cited by: 22
Author(s): Ernest Diez Benavente, Francesc Español i Coll, Nicholas Furnham, Ruth McNerney, Judith R. Glynn, Susana Campino, Arnab Pain, Fady Mohareb, Taane G. Clark
Software Mentions: 1
Published: over 9 years ago