Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: bgzip
https://packages.ecosyste.ms/registries/pypi.org/packages/bgzip
Utilities working with blocked gzip streams.
12 versions
Latest release: over 3 years ago
3 dependent packages
6,418 downloads last month
Papers Mentioning bgzip 16
10.1186/s13072-021-00401-y
Evaluation of whole-genome DNA methylation sequencing library preparation protocolsCited by: 18
Author(s): Jacob Morrison, Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou, David Chesla, Larissa L. Rossell, Emily J. Siegwald, Marie Adams, Hui Shen
Software Mentions: 8
Published: over 3 years ago
10.1186/s12864-018-4835-2
Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)Cited by: 15
Author(s): Julien Richard Albert, Takao Koike, Hamid Younesy, Iain Thompson, Aaron B. Bogutz, Mehdi Karimi, Matthew C. Lorincz
Software Mentions: 7
Published: over 6 years ago
10.1186/s12864-018-5264-y
Helmsman: fast and efficient mutation signature analysis for massive sequencing datasetsCited by: 18
Author(s): Jedidiah Carlson, Jun Z. Li, Sebastian Zöllner
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0252207
Genomic diversity of 39 samples of Pyropia species grown in JapanCited by: 4
Author(s): Yukio Nagano, Kei Kimura, Genta Kobayashi, Yoshio Kawamura
Software Mentions: 6
Published: over 3 years ago
10.3389/fmicb.2020.591093
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency TestCited by: 8
Author(s): David Dylus, Trestan Pillonel, Onya Opota, Daniel Wüthrich, Helena M. B. Seth-Smith, Adrian Egli, Stefano Leo, Vladimir Lazarević, Jacques Schrenzel, Sacha Laurent, Claire Bertelli, Dominique Blanc, Stefan Neuenschwander, Alban Ramette, Laurent Falquet, Frank Imkamp, Peter M. Keller, André Kahles, Simone Oberhaensli, Valérie Barbié, Christophe Dessimoz, Gilbert Greub, Aitana Lebrand
Software Mentions: 6
Published: almost 4 years ago
10.1093/gigascience/giz110
Evaluation of computational genotyping of structural variation for clinical diagnosesCited by: 34
Author(s): Varuna Chander, Richard A. Gibbs, Fritz J. Sedlazeck
Software Mentions: 4
Published: about 5 years ago
10.1186/1471-2105-14-356
Processing genome scale tabular data with wormtableCited by: 11
Author(s): Jerome Kelleher, Rob W. Ness, Daniel L. Halligan
Software Mentions: 3
Published: almost 11 years ago
10.1093/gigascience/giab007
HTSlib: C library for reading/writing high-throughput sequencing dataCited by: 147
Author(s): James K. Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas M. Keane, Robert M. Davies
Software Mentions: 2
Published: almost 4 years ago
10.1093/bioinformatics/btaa290
genozip: a fast and efficient compression tool for VCF filesCited by: 12
Author(s): Divon Mordechai Lan, Raymond Tobler, Yassine Souilmi, Bastien Llamas
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0181604
Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population geneticsCited by: 25
Author(s): Ayal B. Gussow, Brett Copeland, Ryan S. Dhindsa, Quanli Wang, Slavé Petrovski, William H. Majoros, Andrew S. Allen, David B. Goldstein
Software Mentions: 1
Published: over 7 years ago
10.1093/bioinformatics/btaa1004
Sparse Project VCF: efficient encoding of population genotype matricesCited by: 1
Author(s): Michael Lin, Xiaodong Bai, William Salerno, Jeffrey G. Reid
Software Mentions: 1
Published: almost 4 years ago
10.1186/1756-0500-5-31
VPA: an R tool for analyzing sequencing variants with user-specified frequency patternCited by: 0
Author(s): Qiang Hu, Dan Wang, Yan Li, Hua Zhao, Song Liu
Software Mentions: 1
Published: almost 13 years ago
10.1534/g3.114.013482
The Genome of the Chicken DT40 Bursal Lymphoma Cell LineCited by: 24
Author(s): J. Molnár, Ádám Póti, Orsolya Pipek, Marcin Krzystanek, Nnennaya Kanu, Charles Swanton, Gábor Tusnády, Zoltán Szállási, István Csabai, Dávid Szűts
Software Mentions: 1
Published: about 10 years ago
10.1186/s13059-016-0973-5
Vcfanno: fast, flexible annotation of genetic variantsCited by: 130
Author(s): Brent S. Pedersen, Ryan M. Layer, Aaron R. Quinlan
Software Mentions: 1
Published: over 8 years ago
10.1186/s12920-017-0297-7
Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratoryCited by: 4
Author(s): П. М. Пономаренко, Alex Ryutov, Dennis T. Maglinte, Ancha Baranova, Tatiana V. Tatarinova, Xiaowu Gai
Software Mentions: 1
Published: about 7 years ago
10.1186/s12859-015-0603-3
PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosisCited by: 22
Author(s): Ernest Diez Benavente, Francesc Español i Coll, Nicholas Furnham, Ruth McNerney, Judith R. Glynn, Susana Campino, Arnab Pain, Fady Mohareb, Taane G. Clark
Software Mentions: 1
Published: over 9 years ago