Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: skygrid

https://packages.ecosyste.ms/registries/pypi.org/packages/skygrid

The SkyGrid Python SDK
5 versions
Latest release: about 8 years ago
5 downloads last month

Papers Mentioning skygrid 15

The Phylogeography and Spatiotemporal Spread of South-Central Skunk Rabies Virus
Cited by: 31
Author(s): Natalia Kuzmina, Philippe Lemey, Ivan V. Kuzmin, Bonny Mayes, James A. Ellison, Lillian A. Orciari, Dillon Hightower, Steven T Taylor, Charles E. Rupprecht
Software Mentions: 3
Published: almost 11 years ago

10.1101/2021.01.18.427056

Model design for non-parametric phylodynamic inference and applications to pathogen surveillance
Cited by: 3
Author(s): Xavier Didelot, Lily Geidelberg, Erik Volz
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-39406-9

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
Cited by: 32
Author(s): Thiago Moreno L. Souza, Yasmine Rangel Vieira, Edson Delatorre, Giselle Barbosa-Lima, Raul Leal Faria Luiz, AG Vizzoni, Komal Jain, Mauro Sayão de Miranda, Nishit Bhuva, Jan F. Gogarten, James Ng, Riddhi Thakkar, Andrea Surrage Calheiros, Ana Paula Teixeira Monteiro, Patrı́cia T. Bozza, Fernando A. Bozza, Diogo A. Tschoeke, Luciana Leomil, Marcos César Lima de Mendonça, Cintia Damasceno dos Santos Rodrigues, María Celeste Torres, Ana María Bispo de Filippis, Rita Maria Ribeiro Nogueira, Fabiano L. Thompson, Cristina Lemos, Betina Durovni, José Cerbino-Neto, Carlos Morel, W. Ian Lipkin, Nischay Mishra
Software Mentions: 2
Published: over 5 years ago

10.3390/v11090814

Evolutionary Dynamics of the Lineage 2 West Nile Virus That Caused the Largest European Epidemic: Italy 2011–2018
Cited by: 27
Author(s): Carla Veo, Carla Della Ventura, Ana Moreno, Francesca Rovida, Elena Percivalle, Sabrina Canziani, Deborah Torri, Mattia Calzolari, Fausto Baldanti, Massimo Galli, Gianguglielmo Zehender
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0007065

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon
Cited by: 64
Author(s): Felipe Gomes Naveca, Ingra Morales Claro, Marta Giovanetti, Jaqueline Góes de Jesus, Joilson Xavier, Felipe Campos de Melo Iani, Valdinete Alves do Nascimento, Victor Costa de Souza, Paola Paz Silveira, José Lourenço, Mauricio Santillana, Moritz U. G. Kraemer, Josh Quick, Sarah C. Hill, Julien Thézé, Rodrigo Dias de Oliveira Carvalho, Vasco Azevedo, Flávia Cristina da Silva Salles, Márcio Roberto Teixeira Nunes, Poliana da Silva Lemos, Darlan da Silva Cândido, Glauco de Carvalho Pereira, Marluce Aparecida Assunção Oliveira, Cátia Alexandra Ribeiro Meneses, Rodrigo Melo Maito, Claudeth Rocha Santa Brígida Cunha, Daniela Palha de Sousa Campos, Márcia da Costa Castilho, Thalita Caroline da Silva Siqueira, Tiza Matos Terra, Carlos Frederico Campelo de Albuquerque, Laura N. Cruz, André Luiz de Abreu, Divino Valerio Martins, Daniele Silva de Moraes Vanlume Simoes, Renato Santana Aguiar, Sérgio Luíz Bessa Luz, Nicholas J. Loman, Oliver G. Pybus, Éster Cerdeira Sabino, Osnei Okumoto, Luíz Carlos Júnior Alcântara, Nuno Rodrigues Faria
Software Mentions: 1
Published: over 5 years ago

10.1038/srep17226

Bones hold the key to DNA virus history and epidemiology
Cited by: 26
Author(s): Mari Toppinen, Maria F. Perdomo, Jukka U. Palo, Peter Simmonds, Samantha Lycett, Maria Söderlund‐Venermo, Antti Sajantila, Klaus Hedman
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-29201-3

HIV-1 Transmissions Among Recently Infected Individuals in Southwest China are Predominantly Derived from Circulating Local Strains
Cited by: 16
Author(s): Jianjun Li, Yue Feng, Zhiyong Shen, Yingxin Li, Zhenzhu Tang, Runsong Xiong, Hongman Zhang, Jing Wei, Xinjuan Zhou, Yueqin Deng, Ningye Fang, Guanghua Lan, Shanshan Liang, Qingqing Zhu, Hui Xing, Yuhua Ruan, Yiming Shao
Software Mentions: 1
Published: about 6 years ago

10.1093/sysbio/syy007

Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance
Cited by: 72
Author(s): Erik Volz, Xavier Didelot
Software Mentions: 1
Published: almost 7 years ago

10.1093/sysbio/syu015

Inferring Heterogeneous Evolutionary Processes Through Time: from Sequence Substitution to Phylogeography
Cited by: 70
Author(s): Filip Bielejec, Philippe Lemey, Guy Baele, Andrew Rambaut, Marc A. Suchard
Software Mentions: 1
Published: over 10 years ago

10.1093/sysbio/syy032

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Cited by: 5,778
Author(s): Andrew Rambaut, Alexei J. Drummond, Donghua Xie, Guy Baele, Marc A. Suchard
Software Mentions: 1
Published: over 6 years ago

10.1093/molbev/msaa016

Jointly Inferring the Dynamics of Population Size and Sampling Intensity from Molecular Sequences
Cited by: 28
Author(s): Kris V Parag, Louis du Plessis, Oliver G. Pybus
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.31257

MERS-CoV spillover at the camel-human interface
Cited by: 153
Author(s): Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford
Software Mentions: 1
Published: almost 7 years ago

10.1093/ve/veaa050

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17
Cited by: 3
Author(s): Everlyn Kamau, James R. Otieno, Nickson Murunga, John W Oketch, Joyce M. Ngoi, Zaydah R. de Laurent, Anthony Mwema, Joyce U. Nyiro, Charles N. Agoti, D. James Nokes
Software Mentions: 1
Published: over 4 years ago

10.3390/v13061098

A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic
Cited by: 11
Author(s): Andreas Chrysostomou, Bram Vrancken, George Koumbaris, George Themistokleous, Antonia Aristokleous, Christina Masia, Christina Eleftheriou, Costakis Iοannou, Dora C. Stylianou, Marios Ioannides, Panagiotis Petrou, Vasilis Georgiou, Amalia Hatziyianni, Philippe Lemey, Anne‐Mieke Vandamme, Philippos P Patsalis, Leondios G. Kostrikis
Software Mentions: 1
Published: over 3 years ago

10.12688/wellcomeopenres.15770.1

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework
Cited by: 13
Author(s): Guy Baele, Mandev S. Gill, Philippe Lemey, Marc A. Suchard
Software Mentions: 1
Published: over 4 years ago