Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Toucan

https://packages.ecosyste.ms/registries/pypi.org/packages/Toucan

A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and more
1 version
Latest release: almost 9 years ago
16 downloads last month

Papers Mentioning Toucan 16

10.1186/1471-2164-6-68
Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
Cited by: 45
Author(s): Sven Nelander, Erik Larsson, Erik Kristiansson, Robert Månsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl
Software Mentions: 4
Published: over 19 years ago
10.1186/1471-2105-9-527
Compo: composite motif discovery using discrete models
Cited by: 11
Author(s): Geir Kjetil Sandve, Osman Abul, Finn Drabløs
Software Mentions: 3
Published: almost 16 years ago
10.1186/1471-2105-7-229
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
Cited by: 38
Author(s): Bertrand R. Huber, Martha L. Bulyk
Software Mentions: 3
Published: over 18 years ago
10.1093/database/bat069
Nencki Genomics Database—Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs
Cited by: 20
Author(s): Izabella Krystkowiak, Jakub Lenart, Konrad J. Dębski, Piotr Kuterba, Michal Petas, Bożena Kamińska, Michał Dąbrowski
Software Mentions: 3
Published: almost 12 years ago
10.1186/1471-2105-14-9
MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis
Cited by: 27
Author(s): Kjetil Klepper, Finn Drabløs
Software Mentions: 2
Published: almost 12 years ago
10.1186/1471-2407-9-219
DDEC: Dragon database of genes implicated in esophageal cancer
Cited by: 25
Author(s): Magbubah Essack, Aleksandar Radovanović, Ulf Schaefer, Sebastian Schmeier, Sundararajan Vijayaraghava Seshadri, Alan Christoffels, Mandeep Kaur, Vladimir B. Bajic
Software Mentions: 2
Published: over 15 years ago
10.1186/1471-2164-13-221
Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 12 years ago
10.1186/1471-2105-7-396
Predicting transcription factor binding sites using local over-representation and comparative genomics
Cited by: 53
Author(s): Matthieu Defrance, Hélène Touzet
Software Mentions: 2
Published: about 18 years ago
10.1371/journal.pbio.1002364
An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol Pathway
Cited by: 35
Author(s): Kevin A. Robertson, Wei Yuan Hsieh, Thorsten Forster, Mathieu Blanc, Hongjin Lu, Peter J. Crick, Eylan Yutuc, Steven Watterson, Kimberly Martin, Samantha J. Griffiths, Anton J. Enright, Mami Yamamoto, Madapura M. Pradeepa, Kimberly A Lennox, Mark A. Behlke, Simon Talbot, Jürgen Haas, Lars Dölken, William J. Griffiths, Yuqin Wang, Ana Angulo, Peter Ghazal
Software Mentions: 2
Published: over 8 years ago
10.1093/bioinformatics/bts391
ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings
Cited by: 5
Author(s): Ernesto Iacucci, Léon-Charles Tranchevent, Dušan Popović, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2105-7-S4-S21
Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs
Cited by: 11
Author(s): Linyong Mao, W. Jim Zheng
Software Mentions: 1
Published: almost 18 years ago
10.1186/1747-597X-2-7
Therapeutic emails
Cited by: 16
Author(s): Farrokh Alemi, Mary R. Haack, Susanna Nemes, Renita Aughburns, Jennifer Sinkule, Duncan Neuhauser
Software Mentions: 1
Published: almost 18 years ago
10.3389/fnhum.2017.00295
Flat vs. Expressive Storytelling: Young Children’s Learning and Retention of a Social Robot’s Narrative
Cited by: 58
Author(s): Jacqueline M. Kory Westlund, Sooyeon Jeong, Hae W. Park, Samuel Ronfard, Aradhana Adhikari, Paul L. Harris, David DeSteno, Cynthia Breazeal
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-9-352
Spatial and temporal expression of the 23 murine Prolactin/Placental Lactogen-related genes is not associated with their position in the locus
Cited by: 199
Author(s): David G. Simmons, Saara Rawn, Alastair Davies, Martha Hughes, James C. Cross
Software Mentions: 1
Published: over 16 years ago
10.1186/gb-2007-8-5-r77
Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis
Cited by: 24
Author(s): Yingchun Liu, Markus Ringnér
Software Mentions: 1
Published: almost 18 years ago
10.1016/j.immuni.2012.11.004
The Transcription Factor STAT-1 Couples Macrophage Synthesis of 25-Hydroxycholesterol to the Interferon Antiviral Response
Cited by: 317
Author(s): Mathieu Blanc, Wei Yuan Hsieh, Kevin A. Robertson, Kai A. Kropp, Thorsten Forster, Guanghou Shui, Paul Lacaze, Steven Watterson, Samantha J. Griffiths, Nathanael J. Spann, Anna Meljon, Simon Talbot, Kathiresan Krishnan, Douglas F. Covey, Markus R. Wenk, Marie Craigon, Zsolts Ruzsics, Jürgen Haas, Ana Angulo, William J. Griffiths, Christopher K. Glass, Yuqin Wang, Peter Ghazal
Software Mentions: 1
Published: almost 12 years ago