Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Toucan
https://packages.ecosyste.ms/registries/pypi.org/packages/Toucan
A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and more
1 version
Latest release: over 8 years ago
16 downloads last month
Papers Mentioning Toucan 16
10.1186/1471-2164-6-68
Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammalsCited by: 45
Author(s): Sven Nelander, Erik Larsson, Erik Kristiansson, Robert Månsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl
Software Mentions: 4
Published: over 19 years ago
10.1186/1471-2105-9-527
Compo: composite motif discovery using discrete modelsCited by: 11
Author(s): Geir Kjetil Sandve, Osman Abul, Finn Drabløs
Software Mentions: 3
Published: almost 16 years ago
10.1186/1471-2105-7-229
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression dataCited by: 38
Author(s): Bertrand R. Huber, Martha L. Bulyk
Software Mentions: 3
Published: over 18 years ago
10.1093/database/bat069
Nencki Genomics Database—Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifsCited by: 20
Author(s): Izabella Krystkowiak, Jakub Lenart, Konrad J. Dębski, Piotr Kuterba, Michal Petas, Bożena Kamińska, Michał Dąbrowski
Software Mentions: 3
Published: over 11 years ago
10.1186/1471-2105-14-9
MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysisCited by: 27
Author(s): Kjetil Klepper, Finn Drabløs
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2407-9-219
DDEC: Dragon database of genes implicated in esophageal cancerCited by: 25
Author(s): Magbubah Essack, Aleksandar Radovanović, Ulf Schaefer, Sebastian Schmeier, Sundararajan Vijayaraghava Seshadri, Alan Christoffels, Mandeep Kaur, Vladimir B. Bajic
Software Mentions: 2
Published: about 15 years ago
10.1186/1471-2164-13-221
Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grassesCited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 12 years ago
10.1186/1471-2105-7-396
Predicting transcription factor binding sites using local over-representation and comparative genomicsCited by: 53
Author(s): Matthieu Defrance, Hélène Touzet
Software Mentions: 2
Published: about 18 years ago
10.1371/journal.pbio.1002364
An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol PathwayCited by: 35
Author(s): Kevin A. Robertson, Wei Yuan Hsieh, Thorsten Forster, Mathieu Blanc, Hongjin Lu, Peter J. Crick, Eylan Yutuc, Steven Watterson, Kimberly Martin, Samantha J. Griffiths, Anton J. Enright, Mami Yamamoto, Madapura M. Pradeepa, Kimberly A Lennox, Mark A. Behlke, Simon Talbot, Jürgen Haas, Lars Dölken, William J. Griffiths, Yuqin Wang, Ana Angulo, Peter Ghazal
Software Mentions: 2
Published: over 8 years ago
10.1093/bioinformatics/bts391
ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairingsCited by: 5
Author(s): Ernesto Iacucci, Léon-Charles Tranchevent, Dušan Popović, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2105-7-S4-S21
Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifsCited by: 11
Author(s): Linyong Mao, W. Jim Zheng
Software Mentions: 1
Published: almost 18 years ago
10.1186/1747-597X-2-7
Therapeutic emailsCited by: 16
Author(s): Farrokh Alemi, Mary R. Haack, Susanna Nemes, Renita Aughburns, Jennifer Sinkule, Duncan Neuhauser
Software Mentions: 1
Published: over 17 years ago
10.3389/fnhum.2017.00295
Flat vs. Expressive Storytelling: Young Children’s Learning and Retention of a Social Robot’s NarrativeCited by: 58
Author(s): Jacqueline M. Kory Westlund, Sooyeon Jeong, Hae W. Park, Samuel Ronfard, Aradhana Adhikari, Paul L. Harris, David DeSteno, Cynthia Breazeal
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-9-352
Spatial and temporal expression of the 23 murine Prolactin/Placental Lactogen-related genes is not associated with their position in the locusCited by: 199
Author(s): David G. Simmons, Saara Rawn, Alastair Davies, Martha Hughes, James C. Cross
Software Mentions: 1
Published: about 16 years ago
10.1186/gb-2007-8-5-r77
Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysisCited by: 24
Author(s): Yingchun Liu, Markus Ringnér
Software Mentions: 1
Published: over 17 years ago
10.1016/j.immuni.2012.11.004
The Transcription Factor STAT-1 Couples Macrophage Synthesis of 25-Hydroxycholesterol to the Interferon Antiviral ResponseCited by: 317
Author(s): Mathieu Blanc, Wei Yuan Hsieh, Kevin A. Robertson, Kai A. Kropp, Thorsten Forster, Guanghou Shui, Paul Lacaze, Steven Watterson, Samantha J. Griffiths, Nathanael J. Spann, Anna Meljon, Simon Talbot, Kathiresan Krishnan, Douglas F. Covey, Markus R. Wenk, Marie Craigon, Zsolts Ruzsics, Jürgen Haas, Ana Angulo, William J. Griffiths, Christopher K. Glass, Yuqin Wang, Peter Ghazal
Software Mentions: 1
Published: over 11 years ago