Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Elixir

https://packages.ecosyste.ms/registries/pypi.org/packages/Elixir

Declarative Mapper for SQLAlchemy
11 versions
Latest release: almost 15 years ago
6,387 downloads last month

Papers Mentioning Elixir 15

The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling
Cited by: 13
Author(s): Vasundra Touré, Åsmund Flobak, Anna Niarakis, Steven Vercruysse, Martin Kuiper
Software Mentions: 9
Published: almost 4 years ago

10.1093/gigascience/giz105

rCASC: reproducible classification analysis of single-cell sequencing data
Cited by: 24
Author(s): Luca Alessandrì, Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Martina Olivero, Greta Romano, Sergio Rabellino, Nicola Licheri, Gennaro De Libero, Luigia Pace, Raffaele Calogero
Software Mentions: 5
Published: about 5 years ago

10.12688/wellcomeopenres.10210.2

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data
Cited by: 17
Author(s): Aravind Venkatesan, Jee-Hyub Kim, Francesco Talo, Michele Ide-Smith, Julien Gobeill, Jacob Carter, Riza Theresa Batista-Navarro, Sophia Ananiadou, Patrick Ruch, Johanna McEntyre
Software Mentions: 4
Published: over 7 years ago

10.1021/acs.jproteome.0c00904

BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers
Cited by: 16
Author(s): Jinwen Bai, Chakradhar Bandla, Jiaxin Guo, Roberto Vera Alvarez, Mingze Bai, Juan Antonio Vizcaíno, Pablo Moreno-Ger, Björn Grüning, Olivier Sallou, Yasset Perez‐Riverol
Software Mentions: 3
Published: over 3 years ago

10.12688/f1000research.9656.2

Identifying ELIXIR Core Data Resources
Cited by: 40
Author(s): Christine Durinx, Johanna McEntyre, Ron D. Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Charles E. Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo López, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Alfonso Valencia
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.9954

The reuse of public datasets in the life sciences: potential risks and rewards
Cited by: 24
Author(s): Katharina Sielemann, Alenka Hafner, Boas Pucker
Software Mentions: 2
Published: about 4 years ago

10.1007/s00412-020-00745-6

Analysis of the small chromosomal Prionium serratum (Cyperid) demonstrates the importance of reliable methods to differentiate between mono- and holocentricity
Cited by: 4
Author(s): Mariana Báez, Yi‐Tzu Kuo, Yhanndra Dias, Thaíssa Boldieri de Souza, Anastassia Boudichevskaia, Joerg Fuchs, Veit Schubert, André Luís Laforga Vanzela, Andrea Pedrosa‐Harand
Software Mentions: 2
Published: almost 4 years ago

10.12688/f1000research.12342.2

The future of metabolomics in ELIXIR
Cited by: 4
Author(s): Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Domínguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra González-Beltrán, Thomas Hankemeier, Kenneth Haug, José Luis Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno-Ger, Nicholas Κ. Moschonas, Steffen Neumann, Claire O’Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel Spicer, Ola Spjuth, Etienne Thévenot, Mark R. Viant, Ralf Weber, Egon Willighagen, Gianluigi Zanetti, Christoph Steinbeck
Software Mentions: 2
Published: about 7 years ago

10.12688/f1000research.19013.1

de.NBI Cloud federation through ELIXIR AAI
Cited by: 11
Author(s): Peter Belmann, Björn Fischer, Jan Walters Kruger, Michal Procházka, Helena Rasche, Manuel Prinz, Maximilian Hanussek, Martin Lang, Felix Bartusch, Benjamin Gläßle, Jens Krüger, Alfred Pühler, Alexander Sczyrba
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.24887.1

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research
Cited by: 5
Author(s): David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltrán, Salvador Capella-Gutierrez, Denise Carvalho-Silva, Victoria Domínguez Del Angel, Joaquı́n Dopazo, Laura I. Furlong, Bo Gao, Leyla García, Dietlind L. Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart Johansson, Thomas Keane, Jan O. Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskošek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferrán Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina González, Bauke Ylstra, Christophe Béroud
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0207318

Karyotype heterogeneity in Philodendron s.l. (Araceae) revealed by chromosome mapping of rDNA loci
Cited by: 11
Author(s): Emanuelle Varão Vasconcelos, Santelmo Vasconcelos, Tiago Ribeiro, Ana Maria Benko‐Iseppon, Ana Christina Brasileiro-Vidal
Software Mentions: 1
Published: almost 6 years ago

10.12688/f1000research.7536.1

BioShaDock: a community driven bioinformatics shared Docker-based tools registry
Cited by: 38
Author(s): François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin
Software Mentions: 1
Published: almost 9 years ago

10.3390/s19184017

Elemental: An Open-Source Wireless Hardware and Software Platform for Building Energy and Indoor Environmental Monitoring and Control
Cited by: 36
Author(s): Akram Syed Ali, Christopher Coté, Mohammad Heidarinejad, Brent Stephens
Software Mentions: 1
Published: about 5 years ago

10.1007/s11627-018-9900-7

The impact of media composition on production of flavonoids in agitated shoot cultures of the three Hypericum perforatum L. cultivars ‘Elixir,’ ‘Helos,’ and ‘Topas’
Cited by: 19
Author(s): Inga Kwiecień, Julia Smolin, Ludger Beerhues, Halina Ekiert
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-018-2541-3

Towards practical privacy-preserving genome-wide association study
Cited by: 31
Author(s): Charlotte Bonte, Eleftheria Makri, Amin Ardeshirdavani, Jaak Simm, Yves Moreau, Fréderik Vercauteren
Software Mentions: 1
Published: almost 6 years ago