Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: deblur
https://packages.ecosyste.ms/registries/pypi.org/packages/deblur
Deblur
14 versions
Latest release: about 6 years ago
31 downloads last month
Papers Mentioning deblur 15
10.1093/dnares/dsaa017
A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platformCited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: about 4 years ago
10.3390/microorganisms9071368
Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)Cited by: 0
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Martin Taubert, Nico Jehmlich, Martin von Bergen, Kirsten Küsel
Software Mentions: 7
Published: about 3 years ago
10.1128/mSystems.00540-20
Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic ResolutionCited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: about 4 years ago
10.1186/s12859-020-03591-6
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilitiesCited by: 1
Author(s): Yulia Kondratenko, Anton Korobeynikov, Alla Lapidus
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.ppat.1009234
Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivoransCited by: 20
Author(s): Edward Davis Carter, Molly C. Bletz, Mitchell Le Sage, Brandon LaBumbard, Louise A. Rollins‐Smith, Douglas C. Woodhams, Debra L. Miller, Matthew J. Gray
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-59016-0
Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population StudyCited by: 71
Author(s): Zachary M. Burcham, Nicole L. Garneau, Sarah S. Comstock, Robin M. Tucker, Rob Knight, Jessica L. Metcalf
Software Mentions: 4
Published: over 4 years ago
10.1099/jmm.0.001256
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitisCited by: 20
Author(s): Christopher J. Barnes, L. Rasmussen, Maria E. Asplund, Steen Wilhelm Knudsen, Maja‐Lisa Clausen, Tove Agner, Anders J. Hansen
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0242553
Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocolCited by: 3
Author(s): Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, João Victor Taba, Vitoria Carneiro de Mattos, Leonardo Zumerkorn Pipek, Eugênia Machado Carneiro D’Albuquerque, Leandro Ryuchi Iuamoto, Alberto Meyer, Wellington Andraus, João Renato Rebello Pinho, Eduardo Guimarães Hourneaux de Moura, João Carlos Setúbal, Luiz Augusto Carneiro-D’Albuquerque
Software Mentions: 3
Published: almost 4 years ago
10.1186/s40748-021-00131-9
Methods for exploring the faecal microbiome of premature infants: a reviewCited by: 3
Author(s): Jacob A. F. Westaway, Roger Huerlimann, Catherine M. Miller, Yoga Kandasamy, Robert Norton, Donna Rudd
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0240336
Taxonomic profiling of individual nematodes isolated from copse soils using deep amplicon sequencing of four distinct regions of the 18S ribosomal RNA geneCited by: 10
Author(s): Harutaro Kenmotsu, Kiichi Uchida, Yuu Hirose, Toshihiko Eki
Software Mentions: 3
Published: almost 4 years ago
10.1128/mSystems.00910-19
Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus)Cited by: 24
Author(s): Lishan Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, Jeffrey A. French
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0223747
Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hostsCited by: 6
Author(s): Molly C. Bletz, Boyke Bunk, Cathrin Spröer, Peter Biwer, Silke Reiter, Falitiana C. E. Rabemananjara, Stefan Schulz, Jörg Overmann, Miguel Vences
Software Mentions: 2
Published: almost 5 years ago
10.1007/s40618-020-01424-0
Alterations of gut microbiota composition in post-finasteride patients: a pilot studyCited by: 18
Author(s): Francesca Borgo, Angeli Dominique Macandog, Silvia Diviccaro, Eva Falvo, Silvia Giatti, Guido Cavaletti, Roberto Cosimo Melcangi
Software Mentions: 2
Published: about 4 years ago
10.6026/97320630017377
Benchmarking of 16S rRNA gene databases using known strain sequencesCited by: 6
Author(s): Kunal Dixit
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.10571
Bacterial meta-analysis of chicken cecal microbiotaCited by: 9
Author(s): Luis Alberto Chica Cárdenas, Viviana Clavijo, Martha J. Vives, Alejandro Reyes
Software Mentions: 1
Published: over 3 years ago