Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: deblur

https://packages.ecosyste.ms/registries/pypi.org/packages/deblur

Deblur
14 versions
Latest release: over 6 years ago
31 downloads last month

Papers Mentioning deblur 15

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: over 4 years ago

10.3390/microorganisms9071368

Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)
Cited by: 0
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Martin Taubert, Nico Jehmlich, Martin von Bergen, Kirsten Küsel
Software Mentions: 7
Published: over 3 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-020-03591-6

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities
Cited by: 1
Author(s): Yulia Kondratenko, Anton Korobeynikov, Alla Lapidus
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1009234

Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans
Cited by: 20
Author(s): Edward Davis Carter, Molly C. Bletz, Mitchell Le Sage, Brandon LaBumbard, Louise A. Rollins‐Smith, Douglas C. Woodhams, Debra L. Miller, Matthew J. Gray
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-59016-0

Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study
Cited by: 71
Author(s): Zachary M. Burcham, Nicole L. Garneau, Sarah S. Comstock, Robin M. Tucker, Rob Knight, Jessica L. Metcalf
Software Mentions: 4
Published: almost 5 years ago

10.1099/jmm.0.001256

Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis
Cited by: 20
Author(s): Christopher J. Barnes, L. Rasmussen, Maria E. Asplund, Steen Wilhelm Knudsen, Maja‐Lisa Clausen, Tove Agner, Anders J. Hansen
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0242553

Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol
Cited by: 3
Author(s): Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, João Victor Taba, Vitoria Carneiro de Mattos, Leonardo Zumerkorn Pipek, Eugênia Machado Carneiro D’Albuquerque, Leandro Ryuchi Iuamoto, Alberto Meyer, Wellington Andraus, João Renato Rebello Pinho, Eduardo Guimarães Hourneaux de Moura, João Carlos Setúbal, Luiz Augusto Carneiro-D’Albuquerque
Software Mentions: 3
Published: about 4 years ago

10.1186/s40748-021-00131-9

Methods for exploring the faecal microbiome of premature infants: a review
Cited by: 3
Author(s): Jacob A. F. Westaway, Roger Huerlimann, Catherine M. Miller, Yoga Kandasamy, Robert Norton, Donna Rudd
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0240336

Taxonomic profiling of individual nematodes isolated from copse soils using deep amplicon sequencing of four distinct regions of the 18S ribosomal RNA gene
Cited by: 10
Author(s): Harutaro Kenmotsu, Kiichi Uchida, Yuu Hirose, Toshihiko Eki
Software Mentions: 3
Published: about 4 years ago

10.1128/mSystems.00910-19

Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus)
Cited by: 24
Author(s): Lishan Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, Jeffrey A. French
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0223747

Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts
Cited by: 6
Author(s): Molly C. Bletz, Boyke Bunk, Cathrin Spröer, Peter Biwer, Silke Reiter, Falitiana C. E. Rabemananjara, Stefan Schulz, Jörg Overmann, Miguel Vences
Software Mentions: 2
Published: about 5 years ago

10.1007/s40618-020-01424-0

Alterations of gut microbiota composition in post-finasteride patients: a pilot study
Cited by: 18
Author(s): Francesca Borgo, Angeli Dominique Macandog, Silvia Diviccaro, Eva Falvo, Silvia Giatti, Guido Cavaletti, Roberto Cosimo Melcangi
Software Mentions: 2
Published: over 4 years ago

10.6026/97320630017377

Benchmarking of 16S rRNA gene databases using known strain sequences
Cited by: 6
Author(s): Kunal Dixit
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.10571

Bacterial meta-analysis of chicken cecal microbiota
Cited by: 9
Author(s): Luis Alberto Chica Cárdenas, Viviana Clavijo, Martha J. Vives, Alejandro Reyes
Software Mentions: 1
Published: almost 4 years ago