Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: hdbscan

https://packages.ecosyste.ms/registries/pypi.org/packages/hdbscan

Clustering based on density with variable density clusters
50 versions
Latest release: over 1 year ago
86 dependent packages
609,057 downloads last month

Papers Mentioning hdbscan 16

10.1186/s12859-020-03774-1

Hypercluster: a flexible tool for parallelized unsupervised clustering optimization
Cited by: 7
Author(s): Lili M. Blumenberg, Kelly V. Ruggles
Software Mentions: 13
Published: about 4 years ago

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing
Cited by: 60
Author(s): Koki Tsuyuzaki, Hiroyuki Sato, K. Sato, Itoshi Nikaido
Software Mentions: 12
Published: almost 5 years ago

10.3389/fcimb.2020.00137

Microbiotyping the Sinonasal Microbiome
Cited by: 15
Author(s): Ahmed Bassiouni, S. Paramasivan, Arron Shiffer, Matthew R. Dillon, Emily K. Cope, Clare Cooksley, Mahnaz Ramezanpour, Sophia Moraitis, Mohammad Javed Ali, Benjamin S. Bleier, Claudio Callejas, Marjolein Cornet, Richard Douglas, Daniel Lorena Dutra, Christos Georgalas, Richard J. Harvey, Peter H. Hwang, Amber U. Luong, Rodney J. Schlosser, Pongsakorn Tantilipikorn, Marc A. Tewfik, Sarah Vreugde, Peter John Wormald, J. Gregory Caporaso, Alkis James Psaltis
Software Mentions: 9
Published: over 4 years ago

10.7554/eLife.60083

Arrayed CRISPRi and quantitative imaging describe the morphotypic landscape of essential mycobacterial genes
Cited by: 38
Author(s): Timothy J. de Wet, Kirstin Winkler, Musa M. Mhlanga, Valerie Mizrahi, Digby F. Warner
Software Mentions: 6
Published: about 4 years ago

10.3389/fbioe.2020.00959

What Has Been Trending in the Research of Polyhydroxyalkanoates? A Systematic Review
Cited by: 25
Author(s): Maciej Guzik, Tomasz Witko, Alexander Steinbüchel, Magdalena Wojnarowska, Mariusz Sołtysik, Sławomir Wawak
Software Mentions: 4
Published: over 4 years ago

10.1186/s12874-021-01352-4

Symptom clusters among cancer survivors: what can machine learning techniques tell us?
Cited by: 6
Author(s): Koen Ilja Neijenhuijs, Carel F.W. Peeters, Henk van Weert, Pim Cuijpers, I. Verdonck-de Leeuw
Software Mentions: 4
Published: over 3 years ago

10.1186/s13007-020-00605-5

High-throughput method for detection and quantification of lesions on leaf scale based on trypan blue staining and digital image analysis
Cited by: 14
Author(s): Emina Mulaosmanovic, Tobias U. T. Lindblom, Marie Bengtsson, Sofia Windstam, Lars Mogren, Salla Marttila, Hartmut Stützel, Beatrix Alsanius
Software Mentions: 4
Published: over 4 years ago

10.1002/1878-0261.12502

Smyd2 conformational changes in response to p53 binding: role of the C‐terminal domain
Cited by: 9
Author(s): Balasubramanian Chandramouli, Gerry Melino, Giovanni Chillemi
Software Mentions: 3
Published: over 5 years ago

10.1002/pro.4067

Improving integrative 3D modeling into low‐ to medium‐resolution electron microscopy structures with evolutionary couplings
Cited by: 1
Author(s): Caitlyn L. McCafferty, David W. Taylor, Edward M. Marcotte
Software Mentions: 2
Published: over 3 years ago

10.1186/s12920-019-0525-4

Impact of cancer mutational signatures on transcription factor motifs in the human genome
Cited by: 10
Author(s): Calvin Wing Yiu Chan, Zuguang Gu, Matthias Bieg, Roland Eils, Carl Herrmann
Software Mentions: 2
Published: over 5 years ago

10.1093/bioinformatics/bty832

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
Cited by: 11
Author(s): Anamaria Crisan, Jennifer L. Gardy, Tamara Munzner
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj-cs.147

Journal of Open Source Software (JOSS): design and first-year review
Cited by: 35
Author(s): Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Teal Tracy, Roman Valls Guimerà, Jacob T. VanderPlas
Software Mentions: 2
Published: almost 7 years ago

10.3390/jpm11040258

Diagnosis and Management of Glioblastoma: A Comprehensive Perspective
Cited by: 15
Author(s): Vianney Gilard, Abdellah Tebani, Ivana Dabaj, Annie Laquerrière, Maxime Fontanilles, Stéphane Derrey, Stéphane Marret, Soumeya Bekri
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm9082447

Intraventricular Hemorrhage in Very Preterm Infants: A Comprehensive Review
Cited by: 21
Author(s): Vianney Gilard, Abdellah Tebani, Soumeya Bekri, Stéphane Marret
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-74876-2

Rescue of germ cells in dnd crispant embryos opens the possibility to produce inherited sterility in Atlantic salmon
Cited by: 31
Author(s): Hilal Güralp, Kai Ove Skaftnesmo, Erik Kjærner-Semb, Anne Hege Straume, Lene Kleppe, Rüdiger Schulz, Rolf B. Edvardsen, Anna Wargelius
Software Mentions: 1
Published: about 4 years ago

10.1016/j.eclinm.2021.100960

Socioeconomic deprivation and genetic ancestry interact to modify type 2 diabetes ethnic disparities in the United Kingdom
Cited by: 11
Author(s): Shashwat Deepali Nagar, Anna María Nápoles, I. King Jordan, Leonardo Mariño-Ramírez
Software Mentions: 1
Published: over 3 years ago