Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03774-1

https://doi.org/10.1186/s12859-020-03774-1

Hypercluster: a flexible tool for parallelized unsupervised clustering optimization

Cited by: 7
Author(s): Lili M. Blumenberg, Kelly V. Ruggles
Published: about 4 years ago

Software Mentions 13

pypi: auto-sklearn
Automated machine learning.
Papers that mentioned: 10
pypi: hdbscan
Clustering based on density with variable density clusters
Papers that mentioned: 16
pypi: hypercluster
A package for automatic clustering hyperparameter optmization
Papers that mentioned: 1
pypi: leidenalg
Leiden is a general algorithm for methods of community detection in large networks.
Papers that mentioned: 3
pypi: louvain
louvain is a general algorithm for methods of community detection in large networks.
Papers that mentioned: 2
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: python-igraph
High performance graph data structures and algorithms (legacy package)
Papers that mentioned: 10
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45