Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: j5

https://packages.ecosyste.ms/registries/pypi.org/packages/j5

j5 Robotics Framework
34 versions
Latest release: about 2 years ago
3 dependent packages
57 downloads last month

Papers Mentioning j5 16

Pydna: a simulation and documentation tool for DNA assembly strategies using python
Cited by: 16
Author(s): Filipa Pereira, Flávio Azevedo, Ângela Carvalho, Gabriela Ribeiro, Mark W. Budde, Börje Johansson
Software Mentions: 4
Published: over 9 years ago

10.1007/s10295-019-02189-z

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases
Cited by: 6
Author(s): Jesus F. Barajas, R.P. McAndrew, Mitchell G. Thompson, Tyler W. H. Backman, Bo Pang, Tristan de Rond, J.H. Pereira, Veronica T. Benites, Héctor García Martín, Edward E. K. Baidoo, Nathan J. Hillson, Paul D. Adams, Jay D. Keasling
Software Mentions: 4
Published: over 5 years ago

10.1515/jib-2020-0005

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Cited by: 17
Author(s): Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik Sheriff, David Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
Software Mentions: 4
Published: over 4 years ago

10.1186/1754-1611-6-1

DeviceEditor visual biological CAD canvas
Cited by: 85
Author(s): Joanna Chen, Douglas Densmore, Timothy S. Ham, Jay D. Keasling, Nathan J. Hillson
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0149483

Modular Synthetic Inverters from Zinc Finger Proteins and Small RNAs
Cited by: 7
Author(s): Justin Hsia, William J. Holtz, Michel M. Maharbiz, Murat Arcak, Jay D. Keasling
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0223935

Repository-based plasmid design
Cited by: 6
Author(s): Joshua J. Timmons, Doug Densmore
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0151087

Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli
Cited by: 25
Author(s): P. Javidpour, Samuel Deutsch, Vivek K. Mutalik, Nathan J. Hillson, Young-Mo Kim, Jay D. Keasling, Harry R. Beller
Software Mentions: 2
Published: over 8 years ago

10.1186/1754-1611-8-4

Design and analysis of LacI-repressed promoters and DNA-looping in a cyanobacterium
Cited by: 76
Author(s): Daniel Camsund, Thorsten Heidorn, Peter Lindblad
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13036-016-0024-5

End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis
Cited by: 51
Author(s): Gregory Linshiz, Erik C. Jensen, Nina Stawski, Chen Bi, Nick Elsbree, Hailong Jiao, Jungkyu Kim, Richard A. Mathies, Jay D. Keasling, Nathan J. Hillson
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep14894

Cyanobacterial Alkanes Modulate Photosynthetic Cyclic Electron Flow to Assist Growth under Cold Stress
Cited by: 46
Author(s): Bertram M. Berla, Rajib Saha, Costas D. Maranas, Himadri B. Pakrasi
Software Mentions: 1
Published: about 9 years ago

10.1186/s12934-016-0484-9

Activation of chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712 by ethanol shock: insights from the promoter fusion studies
Cited by: 13
Author(s): Olga N. Sekurova, Jianhai Zhang, Kåre Andre Kristiansen, Sergey B. Zotchev
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.20188623

Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria
Cited by: 54
Author(s): Karthik Sekar, Roberto Rusconi, John T. Sauls, Tobias Fuhrer, Elad Noor, Jen Nguyen, Vicente Fernández, Marieke F. Buffing, Michael Berney, Suckjoon Jun, Roman Stocker, Uwe Sauer
Software Mentions: 1
Published: about 6 years ago

10.1186/1475-2859-12-107

Development of a broad-host synthetic biology toolbox for ralstonia eutropha and its application to engineering hydrocarbon biofuel production
Cited by: 98
Author(s): Chen Bi, Peter Su, Jana Müller, Yi Chun Yeh, Swapnil R. Chhabra, Harry R. Beller, Steven W. Singer, Nathan J. Hillson
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0149746

N-Terminal-Based Targeted, Inducible Protein Degradation in Escherichia coli
Cited by: 22
Author(s): Karthik Sekar, Andrew M. Gentile, John W. Bostick, Keith E.J. Tyo
Software Mentions: 1
Published: almost 9 years ago

10.3389/fbioe.2020.01009

The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering
Cited by: 30
Author(s): James Alastair McLaughlin, Jacob Beal, Göksel Mısırlı, Raik Grünberg, Bryan Bartley, James Scott-Brown, Prashant Vaidyanathan, Pedro Fontanarrosa, Ernst Oberortner, Anil Wipat, Thomas E. Gorochowski, Chris J. Myers
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2013.00012

Ex vivo DNA Assembly
Cited by: 2
Author(s): Adam Fisher, Zachary B Canfield, Laura C Hayward, Stephen S. Fong, George Howard McArthur
Software Mentions: 1
Published: almost 12 years ago