Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: CROC

https://packages.ecosyste.ms/registries/pypi.org/packages/CROC

A package for calculating ROC curves and Concentrated ROC (CROC) curves.
24 versions
Latest release: about 2 years ago
128 downloads last month

Papers Mentioning CROC 16

Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance
Cited by: 17
Author(s): Darci A. Giacomini, Eric Patterson, Anita Küpper, Roland Beffa, Todd A. Gaines, Patrick J. Tranel
Software Mentions: 8
Published: over 4 years ago

10.1093/molbev/msaa057

Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera)
Cited by: 30
Author(s): Elizabeth J. Duncan, Megan Leask, Peter K. Dearden
Software Mentions: 8
Published: over 4 years ago

10.1186/s13321-016-0180-0

Mapping the 3D structures of small molecule binding sites
Cited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: about 8 years ago

10.1128/mBio.01496-21

The Interspecific Fungal Hybrid <i>Verticillium longisporum</i> Displays Subgenome-Specific Gene Expression
Cited by: 6
Author(s): Jasper R L Depotter, Fabian van Beveren, Luis Rodríguez‐Moreno, Holger Kramer, Edgar A. Chavarro Carrero, Gabriel Lorencini Fiorin, Grardy C. M. van den Berg, Thomas A. Wood, Bart P.H.J. Thomma, Michael Seidl
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1003478

Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor
Cited by: 69
Author(s): Brian G. Pierce, Lance M. Hellman, Moushumi Hossain, Nishant K. Singh, Craig W. Vander Kooi, Zhiping Weng, Brian M. Baker
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0118432

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets
Cited by: 2,230
Author(s): Takaya Saito, Marc Rehmsmeier
Software Mentions: 3
Published: almost 10 years ago

10.3389/fnmol.2014.00051

In silico, in vitro and cellular analysis with a kinome-wide inhibitor panel correlates cellular LRRK2 dephosphorylation to inhibitor activity on LRRK2
Cited by: 46
Author(s): Renée Vancraenenbroeck, Joren De Raeymaecker, Evy Lobbestael, Fangye Gao, Marc De Maeyer, Arnout Voet, Veerle Baekelandt, Jean-Marc Taymans
Software Mentions: 2
Published: over 10 years ago

10.1186/1758-2946-6-23

A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening
Cited by: 22
Author(s): Francois Berenger, Arnout Voet, Xiao Yin Lee, Kam Y. J. Zhang
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-12-618

Identification of proprotein convertase substrates using genome-wide expression correlation analysis
Cited by: 16
Author(s): Hannu Turpeinen, Sampo Kukkurainen, Kati Pulkkinen, Timo E.S. Kauppila, K. Ojala, Vesa P. Hytönen, Marko Pesu
Software Mentions: 2
Published: about 13 years ago

10.1186/s13072-021-00396-6

Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence
Cited by: 6
Author(s): Holger Kramer, David E. Cook, Grardy C. M. van den Berg, Michael Seidl, Bart P.H.J. Thomma
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.01939-17

Functional Analysis of Mating Type Genes and Transcriptome Analysis during Fruiting Body Development of <i>Botrytis cinerea</i>
Cited by: 31
Author(s): Sander Y.A. Rodenburg, Razak Terhem, Javier Veloso, Joost H. M. Stassen, Jan A.L. van Kan
Software Mentions: 2
Published: almost 7 years ago

10.1007/s10822-016-9926-z

All-atom/coarse-grained hybrid predictions of distribution coefficients in SAMPL5
Cited by: 8
Author(s): Samuel Genheden, Jonathan W. Essex
Software Mentions: 1
Published: over 8 years ago

10.1007/s10822-017-0059-9

Solvation free energies and partition coefficients with the coarse-grained and hybrid all-atom/coarse-grained MARTINI models
Cited by: 21
Author(s): Samuel Genheden
Software Mentions: 1
Published: over 7 years ago

10.3390/s17061347

Development and Positioning Accuracy Assessment of Single-Frequency Precise Point Positioning Algorithms by Combining GPS Code-Pseudorange Measurements with Real-Time SSR Corrections
Cited by: 6
Author(s): Miso Kim, Kwan-Dong Park
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-12-121

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources
Cited by: 28
Author(s): Luca Lenzi, Federica Facchin, Francesco Piva, Matteo Giulietti, Maria Chiara Pelleri, Flavia Frabetti, Lorenza Vitale, Raffaella Casadei, Silvia Canaider, Stefania Bortoluzzi, Alessandro Coppe, Gian Antonio Danieli, Giovanni Principato, Sérgio Ferrari, Pierluigi Strippoli
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13059-015-0640-2

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Cited by: 84
Author(s): Ying Liu, Indrani Mukherjee, Karen E. Thum, Miloš Tanurdžić, Manpreet S. Katari, Mariana Obertello, Molly B. Edwards, W. Richard McCombie, Robert A. Martienssen, Gloria M. Coruzzi
Software Mentions: 1
Published: over 9 years ago