Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: d

https://packages.ecosyste.ms/registries/pypi.org/packages/d

Documentation generation that won't make you tear your hair out.
6 versions
Latest release: over 11 years ago
1 dependent package
2,202 downloads last month

Papers Mentioning d 16

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Cited by: 84
Author(s): Valentina Peona, Mozes P. K. Blom, Luohao Xu, Reto Burri, Shawn Sullivan, Ignas Bunikis, Ivan Liachko, Tri Haryoko, Knud A. Jønsson, Qi Zhou, Martin Irestedt, Alexander Suh
Software Mentions: 6
Published: about 4 years ago

10.1111/1755-0998.13020

Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary
Cited by: 36
Author(s): Jean P. Elbers, Mark F. Rogers, Polina L. Perelman, Anastasia A. Proskuryakova, Natalia A. Serdyukova, Warren E. Johnson, Petr Hořín, Jukka Corander, David Murphy, Pamela A. Burger
Software Mentions: 5
Published: over 5 years ago

10.1120/jacmp.v17i3.5885

Evaluation of the Eclipse eMC algorithm for bolus electron conformal therapy using a standard verification dataset
Cited by: 7
Author(s): Robert L. Carver, Conrad P. Sprunger, Kenneth R. Hogstrom, Richard A. Popple, John A. Antolak
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-8-104

HMM-ModE – Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences
Cited by: 34
Author(s): Prashant K. Srivastava, Dhwani Desai, Soumyadeep Nandi, Andrew M. Lynn
Software Mentions: 2
Published: over 17 years ago

10.1002/acm2.12878

A novel and clinically useful dynamic conformal arc (DCA)‐based VMAT planning technique for lung SBRT
Cited by: 13
Author(s): Damodar Pokhrel, Justin Visak, Lana Sanford
Software Mentions: 2
Published: over 4 years ago

10.1029/2020WR027385

Function Space Optimization: A Symbolic Regression Method for Estimating Parameter Transfer Functions for Hydrological Models
Cited by: 15
Author(s): Moritz Feigl, Mathew Herrnegger, Daniel Klotz, Karsten Schulz
Software Mentions: 2
Published: about 4 years ago

10.2196/jmir.3523

Using a Geolocation Social Networking Application to Calculate the Population Density of Sex-Seeking Gay Men for Research and Prevention Services
Cited by: 20
Author(s): Kevin P. Delaney, Michael R. Kramer, Lance A. Waller, W. Dana Flanders, Patrick S. Sullivan
Software Mentions: 2
Published: about 10 years ago

10.3389/fpsyt.2017.00057

Exploring the Intersections of Trauma, Structural Adversity, and Psychosis among a Primarily African-American Sample: A Mixed-Methods Analysis
Cited by: 17
Author(s): Cherise Rosen, Nev Jones, Eleanor Longden, Kayla A. Chase, Mona Shattell, Jennifer K. Melbourne, Sarah K. Keedy, Rajiv P. Sharma
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-21424-8

The effect of air pulse-driven whole eye motion on the association between corneal hysteresis and glaucomatous visual field progression
Cited by: 10
Author(s): Shuichiro Aoki, Hiroshi Murata, Masato Matsuura, Yuri Fujino, Shunsuke Nakakura, Yoshitaka Nakao, Yoshiaki Kiuchi, Ryo Asaoka
Software Mentions: 1
Published: almost 7 years ago

10.1002/jor.23901

Outcome assessment for Brachial Plexus birth injury. Results from the iPluto world‐wide consensus survey
Cited by: 36
Author(s): Willem Pondaag, Martijn J. A. Malessy
Software Mentions: 1
Published: over 6 years ago

10.1186/s12918-016-0370-4

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers
Cited by: 18
Author(s): Shila Ghazanfar, Adam J. Bisogni, John T. Ormerod, David M. Lin, Jean Yee Hwa Yang
Software Mentions: 1
Published: almost 8 years ago

10.3390/biology10040346

ERK1/2: An Integrator of Signals That Alters Cardiac Homeostasis and Growth
Cited by: 17
Author(s): Christopher J. Gilbert, Jacob Z. Longenecker, Federica Accornero
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2867-14-13

Sensitization of U937 leukemia cells to doxorubicin by the MG132 proteasome inhibitor induces an increase in apoptosis by suppressing NF-kappa B and mitochondrial membrane potential loss
Cited by: 44
Author(s): Pablo César Ortiz‐Lazareno, Alejandro Bravo-Cuéllar, José Manuel Lerma-Díaz, Luis Felipe Jave‐Suárez, Adriana Aguilar‐Lemarroy, Jorge Ramiro Domínguez-Rodríguez, Óscar González-Ramella, Ruth De Célis, Paulina Gómez-Lomelí, Georgina Hernández‐Flores
Software Mentions: 1
Published: almost 11 years ago

10.1002/cam4.2625

Real‐world survival of patients with advanced BRAF V600 mutated melanoma treated with front‐line BRAF/MEK inhibitors, anti‐PD‐1 antibodies, or nivolumab/ipilimumab
Cited by: 41
Author(s): Justin Moser, Danli Chen, Siwen Hu‐Lieskovan, Kenneth F. Grossmann, Shiven B. Patel, Sarah Colonna, Ying Jin, John Hyngstrom
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0247169

Downregulation of PAICS due to loss of chromosome 4q is associated with poor survival in stage III colorectal cancer
Cited by: 3
Author(s): Yusuke Kobayashi, Kensuke Kumamoto, Hirokazu Okayama, Tomohiro Matsumoto, Hiroshi Nakano, Katsuharu Saito, Yoshiko Matsumoto, Eisei Endo, Yasuyuki Kanke, Yohei Watanabe, Hisashi Onozawa, Shotaro Fujita, Wataru Sakamoto, Motonobu Saito, Tomoyuki Momma, Seiichi Takenoshita, Koji Kono
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2018.01559

Artificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification
Cited by: 26
Author(s): David Zimmer, Kevin Schneider, Frederik Sommer, Michael Schroda, Timo Mühlhaus
Software Mentions: 1
Published: about 6 years ago