Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: DuctApe
https://packages.ecosyste.ms/registries/pypi.org/packages/DuctApe
Analyzing and linking genomics and phenomics experiments
19 versions
Latest release: over 4 years ago
50 downloads last month
Papers Mentioning DuctApe 16
10.1371/journal.pone.0201915
Galleria mellonella as an insect model for P. destructans, the cause of White-nose Syndrome in batsCited by: 10
Author(s): Chapman Beekman, Lauren Meckler, Eleanor Kim
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj.4681
Growth Score: a single metric to define growth in 96-well phenotype assaysCited by: 1
Author(s): Daniel A. Cuevas, Robert A. Edwards
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.2130
The<i>in vitro</i>and<i>in vivo</i>effects of constitutive light expression on a bioluminescent strain of the mouse enteropathogen<i>Citrobacter rodentium</i>Cited by: 5
Author(s): Hannah Read, Grant Mills, Sarah H. Johnson, Peter Tsai, James Dalton, Lars Barquist, Cristin G. Print, Wayne M. Patrick, Siouxsie Wiles
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0191053
Integrated phenotypic-genotypic approach to understand the influence of ultrasound on metabolic response of Lactobacillus sakeiCited by: 17
Author(s): K. Shikha Ojha, Catherine M. Burgess, Geraldine Duffy, Joseph P. Kerry, Brijesh K. Tiwari
Software Mentions: 2
Published: almost 7 years ago
10.1128/mBio.00867-21
Analysis of the Oxidative Stress Regulon Identifies <i>soxS</i> as a Genetic Target for Resistance Reversal in Multidrug-Resistant Klebsiella pneumoniaeCited by: 11
Author(s): João Anes, Katherine Dever, Athmanya K. Eshwar, Scott V. Nguyen, Yu Cao, Sathesh K Sivasankaran, Sandra Sakalauskaitė, Angelika Lehner, Stéphanie Devineau, Rimantas Daugelavičius, Roger Stephan, Séamus Fanning, Shabarinath Srikumar
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0171363
Two stable variants of Burkholderia pseudomallei strain MSHR5848 express broadly divergent in vitro phenotypes associated with their virulence differencesCited by: 9
Author(s): April A. Shea, Robert C. Bernhards, Christopher K. Cote, C. J. Chase, Jeffrey W. Koehler, Christopher P. Klimko, Jason T. Ladner, David A. Rozak, Mark J. Wolcott, David P. Fetterer, Steven J. Kern, G. I. Koroleva, Sean Lovett, Gustavo Palacios, Ronald G. Toothman, Joel A. Bozue, Patricia L. Worsham, Susan L. Welkos
Software Mentions: 2
Published: almost 8 years ago
10.3389/fmicb.2019.00092
Exposure to Sub-inhibitory Concentrations of the Chemosensitizer 1-(1-Naphthylmethyl)-Piperazine Creates Membrane Destabilization in Multi-Drug Resistant Klebsiella pneumoniaeCited by: 19
Author(s): João Anes, Sathesh K Sivasankaran, Dechamma Mundanda Muthappa, Séamus Fanning, Shabarinath Srikumar
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2019.00957
Variable Carbon Source Utilization, Stress Resistance, and Virulence Profiles Among Listeria monocytogenes Strains Responsible for Listeriosis Outbreaks in SwitzerlandCited by: 20
Author(s): Francis Muchaamba, Athmanya K. Eshwar, Marc J. A. Stevens, Ueli von Ah, Taurai Tasara
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2020.01726
Evolution of Listeria monocytogenes During a Persistent Human Prosthetic Hip Joint InfectionCited by: 6
Author(s): Francis Muchaamba, Athmanya K. Eshwar, Ueli von Ah, Marc J. A. Stevens, Taurai Tasara
Software Mentions: 2
Published: over 4 years ago
10.3390/microorganisms7040101
Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic BacteriaCited by: 8
Author(s): Sabina Żołędowska, Luana Presta, Marco Fondi, Francesca Decorosi, Luciana Giovannetti, Alessio Mengoni, Ewa Łojkowska
Software Mentions: 2
Published: over 5 years ago
10.1128/JB.00545-18
O-Antigen-Dependent Colicin Insensitivity of Uropathogenic Escherichia coliCited by: 23
Author(s): Connor Sharp, Christine J. Boinett, Amy K. Cain, Nicholas G. Housden, Sandip Kumar, A. Keith Turner, Julian Parkhill, Colin Kleanthous
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0139467
Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental RelevanceCited by: 43
Author(s): Alessandro Orro, Martina Cappelletti, Pasqualina D’Ursi, Luciano Milanesi, Alessandra Di Canito, Jessica Zampolli, Elena Collina, Francesca Decorosi, Carlo Viti, Stefano Fedi, Alessandro Presentato, Davide Zannoni, Patrizia Di Gennaro
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-017-00876-4
Ecology of cold environments: new insights of bacterial metabolic adaptation through an integrated genomic-phenomic approachCited by: 56
Author(s): Stefano Mocali, Carolina Chiellini, Arturo Fabiani, Silvia Decuzzi, Donatella de Pascale, Ermenegilda Parrilli, Maria Luisa Tutino, Elena Perrin, Emanuele Bosi, Marco Fondi, Angelina Lo Giudice, Renato Fani
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-97571-2
Characterization and engineering of Streptomyces griseofuscus DSM 40191 as a potential host for heterologous expression of biosynthetic gene clustersCited by: 9
Author(s): Tetiana Gren, Christopher M. Whitford, Omkar S. Mohite, Tue Sparholt Jørgensen, Eftychia E. Kontou, Julie B. Nielsen, Sang Yup Lee, Tilmann Weber
Software Mentions: 1
Published: over 3 years ago
10.1186/s40793-016-0145-y
Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OLCited by: 12
Author(s): Alessandra Adessi, Giulia Spini, Luana Presta, Alessio Mengoni, Carlo Viti, Luciana Giovannetti, Renato Fani, Roberto De Philippis
Software Mentions: 1
Published: almost 9 years ago
10.1128/mBio.01269-16
Phenotypic Profiling Reveals that Candida albicans Opaque Cells Represent a Metabolically Specialized Cell State Compared to Default White CellsCited by: 38
Author(s): Iuliana V. Ene, Matthew B. Lohse, Adrian V. Vladu, Joachim Morschhäuser, Alexander D. Johnson, Richard J. Bennett
Software Mentions: 1
Published: almost 8 years ago