Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: DuctApe

https://packages.ecosyste.ms/registries/pypi.org/packages/DuctApe

Analyzing and linking genomics and phenomics experiments
19 versions
Latest release: over 4 years ago
50 downloads last month

Papers Mentioning DuctApe 16

Galleria mellonella as an insect model for P. destructans, the cause of White-nose Syndrome in bats
Cited by: 10
Author(s): Chapman Beekman, Lauren Meckler, Eleanor Kim
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.4681

Growth Score: a single metric to define growth in 96-well phenotype assays
Cited by: 1
Author(s): Daniel A. Cuevas, Robert A. Edwards
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.2130

Thein vitroandin vivoeffects of constitutive light expression on a bioluminescent strain of the mouse enteropathogenCitrobacter rodentium
Cited by: 5
Author(s): Hannah Read, Grant Mills, Sarah H. Johnson, Peter Tsai, James Dalton, Lars Barquist, Cristin G. Print, Wayne M. Patrick, Siouxsie Wiles
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0191053

Integrated phenotypic-genotypic approach to understand the influence of ultrasound on metabolic response of Lactobacillus sakei
Cited by: 17
Author(s): K. Shikha Ojha, Catherine M. Burgess, Geraldine Duffy, Joseph P. Kerry, Brijesh K. Tiwari
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.00867-21

Analysis of the Oxidative Stress Regulon Identifies soxS as a Genetic Target for Resistance Reversal in Multidrug-Resistant Klebsiella pneumoniae
Cited by: 11
Author(s): João Anes, Katherine Dever, Athmanya K. Eshwar, Scott V. Nguyen, Yu Cao, Sathesh K Sivasankaran, Sandra Sakalauskaitė, Angelika Lehner, Stéphanie Devineau, Rimantas Daugelavičius, Roger Stephan, Séamus Fanning, Shabarinath Srikumar
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0171363

Two stable variants of Burkholderia pseudomallei strain MSHR5848 express broadly divergent in vitro phenotypes associated with their virulence differences
Cited by: 9
Author(s): April A. Shea, Robert C. Bernhards, Christopher K. Cote, C. J. Chase, Jeffrey W. Koehler, Christopher P. Klimko, Jason T. Ladner, David A. Rozak, Mark J. Wolcott, David P. Fetterer, Steven J. Kern, G. I. Koroleva, Sean Lovett, Gustavo Palacios, Ronald G. Toothman, Joel A. Bozue, Patricia L. Worsham, Susan L. Welkos
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.00092

Exposure to Sub-inhibitory Concentrations of the Chemosensitizer 1-(1-Naphthylmethyl)-Piperazine Creates Membrane Destabilization in Multi-Drug Resistant Klebsiella pneumoniae
Cited by: 19
Author(s): João Anes, Sathesh K Sivasankaran, Dechamma Mundanda Muthappa, Séamus Fanning, Shabarinath Srikumar
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.00957

Variable Carbon Source Utilization, Stress Resistance, and Virulence Profiles Among Listeria monocytogenes Strains Responsible for Listeriosis Outbreaks in Switzerland
Cited by: 20
Author(s): Francis Muchaamba, Athmanya K. Eshwar, Marc J. A. Stevens, Ueli von Ah, Taurai Tasara
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01726

Evolution of Listeria monocytogenes During a Persistent Human Prosthetic Hip Joint Infection
Cited by: 6
Author(s): Francis Muchaamba, Athmanya K. Eshwar, Ueli von Ah, Marc J. A. Stevens, Taurai Tasara
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms7040101

Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria
Cited by: 8
Author(s): Sabina Żołędowska, Luana Presta, Marco Fondi, Francesca Decorosi, Luciana Giovannetti, Alessio Mengoni, Ewa Łojkowska
Software Mentions: 2
Published: over 5 years ago

10.1128/JB.00545-18

O-Antigen-Dependent Colicin Insensitivity of Uropathogenic Escherichia coli
Cited by: 23
Author(s): Connor Sharp, Christine J. Boinett, Amy K. Cain, Nicholas G. Housden, Sandip Kumar, A. Keith Turner, Julian Parkhill, Colin Kleanthous
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0139467

Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance
Cited by: 43
Author(s): Alessandro Orro, Martina Cappelletti, Pasqualina D’Ursi, Luciano Milanesi, Alessandra Di Canito, Jessica Zampolli, Elena Collina, Francesca Decorosi, Carlo Viti, Stefano Fedi, Alessandro Presentato, Davide Zannoni, Patrizia Di Gennaro
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-00876-4

Ecology of cold environments: new insights of bacterial metabolic adaptation through an integrated genomic-phenomic approach
Cited by: 56
Author(s): Stefano Mocali, Carolina Chiellini, Arturo Fabiani, Silvia Decuzzi, Donatella de Pascale, Ermenegilda Parrilli, Maria Luisa Tutino, Elena Perrin, Emanuele Bosi, Marco Fondi, Angelina Lo Giudice, Renato Fani
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-97571-2

Characterization and engineering of Streptomyces griseofuscus DSM 40191 as a potential host for heterologous expression of biosynthetic gene clusters
Cited by: 9
Author(s): Tetiana Gren, Christopher M. Whitford, Omkar S. Mohite, Tue Sparholt Jørgensen, Eftychia E. Kontou, Julie B. Nielsen, Sang Yup Lee, Tilmann Weber
Software Mentions: 1
Published: about 3 years ago

10.1186/s40793-016-0145-y

Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OL
Cited by: 12
Author(s): Alessandra Adessi, Giulia Spini, Luana Presta, Alessio Mengoni, Carlo Viti, Luciana Giovannetti, Renato Fani, Roberto De Philippis
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01269-16

Phenotypic Profiling Reveals that Candida albicans Opaque Cells Represent a Metabolically Specialized Cell State Compared to Default White Cells
Cited by: 38
Author(s): Iuliana V. Ene, Matthew B. Lohse, Adrian V. Vladu, Joachim Morschhäuser, Alexander D. Johnson, Richard J. Bennett
Software Mentions: 1
Published: almost 8 years ago