Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pymc3

https://packages.ecosyste.ms/registries/pypi.org/packages/pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
35 versions
Latest release: almost 3 years ago
31 dependent packages
494,850 downloads last month

Papers Mentioning pymc3 16

10.1107/S2053273319011446

Bayesian machine learning improves single-wavelength anomalous diffraction phasing
Cited by: 10
Author(s): María-José García-Bonete, Gergely Katona
Software Mentions: 7
Published: about 5 years ago

Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.
Cited by: 27
Author(s): Mericien Venzon, Lucie Bernard-Raichon, Jonathan Klein, Jordan Axelrad, Grant A. Hussey, Alexis Sullivan, Arnau Casanovas‐Massana, María G. Noval, Ana M. Valero-Jimenez, Juan Gago, Evan Wilder, Yale Impact Team, Akiko Iwasaki, Lorna E. Thorpe, Dan R. Littman, Meike Dittmann, Kenneth A. Stapleford, Bo Shopsin, Victor J. Torres, Albert Icksang Ko, Ken Cadwell, Jonas Schluter
Software Mentions: 6
Published: over 3 years ago

10.7554/eLife.60743

Identification of protein-protected mRNA fragments and structured excised intron RNAs in human plasma by TGIRT-seq peak calling
Cited by: 18
Author(s): Jun Yao, Douglas C. Wu, Ryan M. Nottingham, Alan M. Lambowitz
Software Mentions: 5
Published: over 4 years ago

10.3390/cells10061516

Statistical Approach to Incorporating Experimental Variability into a Mathematical Model of the Voltage-Gated Na+ Channel and Human Atrial Action Potential
Cited by: 0
Author(s): Daniel Gratz, Alexander Winkle, Seth H. Weinberg, Thomas J. Hund
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1006196

Simulations to benchmark time-varying connectivity methods for fMRI
Cited by: 24
Author(s): William Hedley Thompson, Craig G. Richter, Pontus Plavén-Sigray, Peter Fransson
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-021-02594-0

Identifying the lungs as a susceptible site for allele-specific regulatory changes associated with type 1 diabetes risk
Cited by: 1
Author(s): Ho D, Denis M Nyaga, William Schierding, Richard Saffery, Jo Perry, John A. Taylor, Mark H. Vickers, Andreas W. Kempa-Liehr, Justin M. O’Sullivan
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1007424

Bayesian inference of metabolic kinetics from genome-scale multiomics data
Cited by: 30
Author(s): Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E.J. Tyo, Yannick J. Bomble
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-17071-0

Bayesian Analysis of MicroScale Thermophoresis Data to Quantify Affinity of Protein:Protein Interactions with Human Survivin
Cited by: 7
Author(s): María-José García-Bonete, Mikael Jensen, Christian V. Recktenwald, Sandra Rocha, Volker Stadler, Maria Bokarewa, Gergely Katona
Software Mentions: 3
Published: about 7 years ago

10.1107/S2053273316018696

Asymmetry in serial femtosecond crystallography data
Cited by: 11
Author(s): Amit Sharma, Linda C. Johansson, Elin Dunevall, Weixiao Yuan Wahlgren, Richard Neutze, Gergely Katona
Software Mentions: 3
Published: almost 8 years ago

10.1093/braincomms/fcab110

Generative lesion pattern decomposition of cognitive impairment after stroke
Cited by: 18
Author(s): Anna K. Bonkhoff, Jae‐Sung Lim, Hee‐Joon Bae, Nick A. Weaver, Hugo J. Kuijf, J. Matthijs Biesbroek, Natalia S. Rost, Danilo Bzdok
Software Mentions: 2
Published: over 3 years ago

10.1038/s41416-019-0427-4

Exome and immune cell score analyses reveal great variation within synchronous primary colorectal cancers
Cited by: 4
Author(s): Ulrika A. Hänninen, Erkki-Ville Wirta, Riku Katainen, Tomas Tanskanen, Jiri Hamberg, Minna Taipale, Jan Böhm, Laura Renkonen‐Sinisalo, Anna Lepistö, Linda Forsström, Esa Pitkänen, Kimmo Palin, Toni T. Seppälä, Netta Mäkinen, Jukka–Pekka Mecklin∥, Lauri A. Aaltonen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpsyg.2021.657705

Parsing Model and a Rational Theory of Memory
Cited by: 0
Author(s): Jakub Dotlačil, Puck de Haan
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1007679

Detecting critical slowing down in high-dimensional epidemiological systems
Cited by: 33
Author(s): Tobias Brett, Marco Ajelli, Quanhui Liu, Mary G. Krauland, John J. Grefenstette, Willem G. van Panhuis, Alessandro Vespignani, John M. Drake, Pejman Rohani
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0169901

SensibleSleep: A Bayesian Model for Learning Sleep Patterns from Smartphone Events
Cited by: 38
Author(s): Andrea Cuttone, Per Bækgaard, Vedran Sekara, Håkan Jönsson, Jakob Eg Larsen, Sune Lehmann
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-93152-5

Bone mineral density response prediction following osteoporosis treatment using machine learning to aid personalized therapy
Cited by: 8
Author(s): Thiraphat Tanphiriyakun, S. Rojanasthien, Piyapong Khumrin
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2020.553813

Scanning, Contextual Factors, and Association With Performance in English Premier League Footballers: An Investigation Across a Season
Cited by: 20
Author(s): Geir Jordet, Karl Marius Aksum, Daniel Nordheim Pedersen, Anup Walvekar, Arjav Trivedi, Alan McCall, Andréas Ivarsson, David Priestley
Software Mentions: 1
Published: about 4 years ago