Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: cmake

https://packages.ecosyste.ms/registries/pypi.org/packages/cmake

CMake is an open-source, cross-platform family of tools designed to build, test and package software
82 versions
Latest release: 11 months ago
128 dependent packages
6,867,840 downloads last month

Papers Mentioning cmake 16

Automating tasks in protein structure determination with the clipper python module
Cited by: 6
Author(s): Stuart McNicholas, Tristan I. Croll, Tom Burnley, Colin M. Palmer, Soon Wen Hoh, Huw T. Jenkins, E.J. Dodson, Kevin Cowtan, Jon Agirre
Software Mentions: 10
Published: almost 7 years ago

10.1186/s12859-019-2799-0

FastqPuri: high-performance preprocessing of RNA-seq data
Cited by: 22
Author(s): Paula Pérez-Rubio, Claudio Lottaz, Julia C. Engelmann
Software Mentions: 9
Published: over 5 years ago

10.1093/jxb/erw176

Image Harvest: an open-source platform for high-throughput plant image processing and analysis
Cited by: 68
Author(s): Avi C. Knecht, Malachy T. Campbell, Adam Caprez, David Swanson, Harkamal Walia
Software Mentions: 7
Published: over 8 years ago

10.1186/s12859-020-03917-4

ped_draw: pedigree drawing with ease
Cited by: 2
Author(s): Matt Velinder, Dillon Lee, Gábor Marth
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pcbi.1005991

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
Cited by: 280
Author(s): Ahmadreza Ghaffarizadeh, Randy Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-13-308

Estimating relative abundances of proteins from shotgun proteomics data
Cited by: 88
Author(s): Sean J. McIlwain, Michael Mathews, Michael S. Bereman, Edwin W. Rubel, Michael J. MacCoss, William Stafford Noble
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12859-020-03614-2

Extending rnaSPAdes functionality for hybrid transcriptome assembly
Cited by: 13
Author(s): Andrey D. Prjibelski, G. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla Lapidus
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-020-03590-7

SPAligner: alignment of long diverged molecular sequences to assembly graphs
Cited by: 12
Author(s): Tatiana Dvorkina, Dmitry Antipov, Anton Korobeynikov, Sergey Nurk
Software Mentions: 3
Published: about 4 years ago

10.3389/fnins.2014.00015

Connexel visualization: a software implementation of glyphs and edge-bundling for dense connectivity data using brainGL
Cited by: 5
Author(s): Joachim Böttger, Ralph Schurade, Estrid Jakobsen, Alexander Schäfer, Daniel S. Margulies
Software Mentions: 3
Published: over 10 years ago

10.1186/s12859-015-0511-6

Automatic segmentation of deep intracerebral electrodes in computed tomography scans
Cited by: 49
Author(s): Gabriele Arnulfo, Massimo Narizzano, Francesco Cardinale, Marco Fato, J. Matias Palva
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/giz100

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Cited by: 376
Author(s): Elena Bushmanova, Dmitry Antipov, Alla Lapidus, Andrey D. Prjibelski
Software Mentions: 2
Published: about 5 years ago

10.1093/molbev/msy084

Biology Needs Evolutionary Software Tools: Let’s Build Them Right
Cited by: 6
Author(s): Anton Nekrutenko, Galaxy Zoo Team, Jeremy Goecks, James Taylor, Daniel Blankenberg
Software Mentions: 1
Published: over 6 years ago

10.3390/s19235288

A Novel RGB-D SLAM Algorithm Based on Cloud Robotics
Cited by: 11
Author(s): Yanli Li, Heng Zhang, Chao Huang
Software Mentions: 1
Published: almost 5 years ago

10.1002/prot.25851

Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock
Cited by: 13
Author(s): Mieczyslaw Torchala, Tereza Gerguri, Raphaël A. G. Chaleil, Patrick Gordon, Francis Russell, Miriam Keshani, Paul A. Bates
Software Mentions: 1
Published: almost 5 years ago

10.3390/s18072188

Real-Time Vehicle Roll Angle Estimation Based on Neural Networks in IoT Low-Cost Devices
Cited by: 20
Author(s): Javier García Guzmán, Lisardo Prieto-González, Jonatan Pajares Redondo, Mat Max Montalvo Martínez, María Jesús L. Boada
Software Mentions: 1
Published: about 6 years ago

10.1089/cmb.2019.0316

Matching Reads to Many Genomes with the <i>r</i>-Index
Cited by: 7
Author(s): Taher Mun, Alan Kuhnle, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
Software Mentions: 1
Published: over 4 years ago