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Papers: 10.1186/s12859-019-2799-0

https://doi.org/10.1186/s12859-019-2799-0

FastqPuri: high-performance preprocessing of RNA-seq data

Cited by: 22
Author(s): Paula Pérez-Rubio, Claudio Lottaz, Julia C. Engelmann
Published: about 6 years ago

Software Mentions 9

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
Very Likely Science (75)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
pypi: cmake
CMake is an open-source, cross-platform family of tools designed to build, test and package software
Papers that mentioned: 16
Very Likely Science (85)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: gz
Gizmo(QP) extensions to the QP Web Framework
Papers that mentioned: 7
Very Likely Science (65)
pypi: pandoc
Pandoc Documents for Python
Papers that mentioned: 9
Very Likely Science (65)
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
Very Likely Science (80)