Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: tk

https://packages.ecosyste.ms/registries/pypi.org/packages/tk

TensorKit is a deep learning helper between Python and C++.
1 version
Latest release: over 5 years ago
94 dependent packages
423,346 downloads last month

Papers Mentioning tk 16

Damage-Net: A program for DNA repair meta-analysis identifies a network of novel repair genes that facilitate cancer evolution
Cited by: 1
Author(s): Aldo S. Bader, Martin Bushell
Software Mentions: 10
Published: over 3 years ago

10.1080/19490976.2021.1921924

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes
Cited by: 15
Author(s): Fergus W. J. Collins, Calum J. Walsh, Beatriz Gómez‐Sala, E. Guijarro-García, David J. Stokes, Klara B. Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D. Cotter, Mary C. Rea, Colin Hill, R. Paul Ross
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12864-021-07766-0

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
Cited by: 0
Author(s): Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia Haryono, Irina Bessarab, Rohan B. H. Williams, Ulrich Szewzyk
Software Mentions: 7
Published: over 3 years ago

10.1038/srep19233

An evaluation of the accuracy and speed of metagenome analysis tools
Cited by: 273
Author(s): Stinus Lindgreen, Karen L. Adair, Paul P. Gardner
Software Mentions: 3
Published: almost 9 years ago

10.1093/bioinformatics/btu745

Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods
Cited by: 104
Author(s): Johannes Dröge, Ivan Gregor, Alice C. McHardy
Software Mentions: 3
Published: about 10 years ago

10.1186/1471-2105-15-87

Estimation of protein function using template-based alignment of enzyme active sites
Cited by: 13
Author(s): Brett R. Hanson, Charles Westin, Mario De Rosa, Alexander Grier, Mikhail Osipovitch, Madolyn L. MacDonald, Greg J. Dodge, Paule M Boli, Cyprian Corwin, Haeja Kessler, Talia McKay, H. J. Bernstein, P. Craig
Software Mentions: 3
Published: over 10 years ago

10.1002/mrm.27822

Non‐Cartesian GRAPPA and coil combination using interleaved calibration data – application to concentric‐ring MRSI of the human brain at 7T
Cited by: 27
Author(s): Philipp Moser, Wolfgang Bogner, Lukas Hingerl, Eva Hečková, Gilbert Hangel, Stanislav Motyka, Siegfried Trattnig, Bernhard Strasser
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.01380

A Zinc-Dependent Protease AMZ-tk from a Thermophilic Archaeon is a New Member of the Archaemetzincin Protein Family
Cited by: 9
Author(s): Baolei Jia, Zhengqun Li, Jinliang Liu, Ying Sun, Xiaomeng Jia, Yuan Xuan, Jiayan Zhang, Che Ok Jeon
Software Mentions: 2
Published: about 9 years ago

10.1128/mSphere.00613-19

Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface
Cited by: 33
Author(s): Sophie L. Nixon, Rebecca A. Daly, Mikayla A. Borton, Lindsey Solden, Susan A. Welch, David R. Cole, Paula J. Mouser, Michael J. Wilkins, Kelly Wrighton
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.34789

Spatial cell firing during virtual navigation of open arenas by head-restrained mice
Cited by: 43
Author(s): Guifen Chen, John A. King, Yi Lü, Francesca Cacucci, Neil Burgess
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.01118-20

Metagenome-Assembled Genome Sequence of Kapabacteriales Bacterium Strain Clear-D13, Assembled from a Harmful Algal Bloom Enrichment Culture
Cited by: 1
Author(s): Shaikha Al-Saud, Kyra M. Florea, Eric A. Webb, J. Cameron Thrash
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0154219

The Dynamics of the Human Leukocyte Antigen Head Domain Modulates Its Recognition by the T-Cell Receptor
Cited by: 2
Author(s): Estefanía García-Guerrero, Josè Antonio Pérez-Simón, Luis Ignacio Sánchez‐Abarca, Irene Díaz‐Moreno, Miguel Á. De la Rosa, Antonio Díaz-Quintana
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.00795

Out From the Shadows – Resolution of the Taxonomy of the Family Cryomorphaceae
Cited by: 33
Author(s): John P. Bowman
Software Mentions: 1
Published: over 4 years ago

10.1186/s13099-019-0288-7

High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei
Cited by: 19
Author(s): Leigh G. Monahan, Matthew Z. DeMaere, Max L. Cummins, Steven P. Djordjevic, Piklu Roy Chowdhury, Aaron E. Darling
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41597-021-00910-1

Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds
Cited by: 38
Author(s): Moritz Buck, Sarahi L. Garcia, Leyden Fernández, Gaëtan Martin, Gustavo A. Martínez-Rodriguez, Jatta Saarenheimo, Jakob Zopfi, Stefan Bertilsson, Sari Peura
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-021-00957-0

309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula
Cited by: 5
Author(s): Neelam M. Nathani, Kaushambee J. Dave, Priyanka P. Vatsa, Mayur S. Mahajan, Parth Sharma, Malathi Shekar
Software Mentions: 1
Published: over 3 years ago