Ecosyste.ms: Papers

10.1128/mSystems.00200-20

High-Throughput Stool Metaproteomics: Method and Application to Human Specimens
Cited by: 14
Author(s): Carlos Gutiérrez González, Hannah C. Wastyk, Madeline Topf, Christopher D. Gardner, Justin L. Sonnenburg, Joshua E. Elias
Software Mentions: 11
Published: over 4 years ago

10.3390/toxins13080583

Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and Zearalenone
Cited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: over 3 years ago

10.1186/s40168-020-00806-z

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
Cited by: 178
Author(s): Leyuan Li, Zhibin Ning, Xu Zhang, Janice Mayne, Kai Cheng, Alain Stintzi, Daniel Figeys
Software Mentions: 6
Published: over 4 years ago

10.1186/s12915-021-00974-w

Dynamic meta-analysis: a method of using global evidence for local decision making
Cited by: 8
Author(s): Gorm E. Shackelford, Philip A. Martin, Amelia S. C. Hood, Alec P. Christie, Elena Kulinskaya, William J. Sutherland
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms9050980

Metaproteomics—An Advantageous Option in Studies of Host-Microbiota Interaction
Cited by: 10
Author(s): Oleg Karaduta, Zeljko Dvanajscak, Boris Zybailov
Software Mentions: 3
Published: over 3 years ago

10.3389/fphys.2019.00203

Meta-Analytic Methodology for Basic Research: A Practical Guide
Cited by: 93
Author(s): Nicholas Mikolajewicz, Svetlana V. Komarova
Software Mentions: 3
Published: over 5 years ago

10.3390/v13091734

Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach
Cited by: 4
Author(s): Janice Mayne, Xu Zhang, James Butcher, Krystal Walker, Zhibin Ning, Ewelina Wójcik, Jarosław Dastych, Alain Stintzi, Daniel Figeys
Software Mentions: 2
Published: about 3 years ago

10.1186/s40168-017-0375-2

MetaLab: an automated pipeline for metaproteomic data analysis
Cited by: 101
Author(s): Kai Cheng, Zhibin Ning, Xu Zhang, Leyuan Li, Bo Liao, Janice Mayne, Alain Stintzi, Daniel Figeys
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.618566

Distinct Human Gut Microbial Taxonomic Signatures Uncovered With Different Sample Processing and Microbial Cell Disruption Methods for Metaproteomic Analysis
Cited by: 10
Author(s): Carmen García-Durán, Raquel Martínez-López, Inés Zapico, Enrique Pérez, Eduardo Romeu, Javier Arroyo, María Luisa Hernáez, Aida Pitarch, Lucía Monteoliva, Concha Gil
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-019-0767-6

Advancing functional and translational microbiome research using meta-omics approaches
Cited by: 149
Author(s): Xu Zhang, Leyuan Li, James Butcher, Alain Stintzi, Daniel Figeys
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyg.2021.710636

Quantifying Everyday Ecologies: Principles for Manual Annotation of Many Hours of Infants' Lives
Cited by: 6
Author(s): Jennifer K. Mendoza, Caitlin M. Fausey
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-019-46896-0

Extracellular matrix composition of connective tissues: a systematic review and meta-analysis
Cited by: 137
Author(s): Turney J. McKee, George Perlman, Martin Morris, Svetlana V. Komarova
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-021-01035-8

Using high-abundance proteins as guides for fast and effective peptide/protein identification from human gut metaproteomic data
Cited by: 10
Author(s): Moses Stamboulian, Sujun Li, Yuzhen Ye
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11020300

Challenges and Perspective in Integrated Multi-Omics in Gut Microbiota Studies
Cited by: 23
Author(s): Eric Banan‐Mwine Daliri, Fred Kwame Ofosu, Ramachandran Chelliah, Byong H. Lee, Deog‐Hwan Oh
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21082747

Role of UDP-Sugar Receptor P2Y14 in Murine Osteoblasts
Cited by: 10
Author(s): Nicholas Mikolajewicz, Svetlana V. Komarova
Software Mentions: 1
Published: over 4 years ago