Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: STEME
https://packages.ecosyste.ms/registries/pypi.org/packages/STEME
STEME: an accurate efficient motif finder for large data sets.
57 versions
Latest release: almost 6 years ago
181 downloads last month
Papers Mentioning STEME 16
10.1155/2015/205392
Soil Parameter Mapping and Ad Hoc Power Analysis to Increase Blocking Efficiency Prior to Establishing a Long-Term Field ExperimentCited by: 1
Author(s): Doug Collins, Chris A. Benedict, Andy I. Bary, Craig Cogger
Software Mentions: 4
Published: over 9 years ago
10.1186/1471-2164-16-S7-S13
MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signaturesCited by: 6
Author(s): Yizhe Zhang, Yiping He, Guangyong Zheng, Chaochun Wei
Software Mentions: 4
Published: over 9 years ago
10.1186/1471-2164-15-1047
De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasetsCited by: 13
Author(s): Meng Niu, Ehsan Tabari, Zhengchang Su
Software Mentions: 4
Published: almost 10 years ago
10.3389/fpls.2021.664997
Base Editing in Plants: Applications, Challenges, and Future ProspectsCited by: 22
Author(s): Mawuli K. Azameti, Wadzani Dauda Palnam
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0086044
A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched RegionsCited by: 31
Author(s): Caiyan Jia, Matthew B. Carson, Yan Wang, Youfang Lin, Hui Lu
Software Mentions: 2
Published: over 10 years ago
10.3390/ijms22020857
Full-Spectrum Targeted Mutagenesis in Plant and Animal CellsCited by: 0
Author(s): Brian J. Iaffaldano, Jakob Reiser
Software Mentions: 2
Published: over 3 years ago
10.1093/bioinformatics/btv017
Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence setsCited by: 20
Author(s): Hisaki Ikebata, Ryo Yoshida
Software Mentions: 2
Published: over 9 years ago
10.1186/s12575-018-0088-3
Performance evaluation for MOTIFSIMCited by: 0
Author(s): Ngoc Tam L. Tran, Chun-Hsi Huang
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0090735
STEME: A Robust, Accurate Motif Finder for Large Data SetsCited by: 13
Author(s): John E. Reid, Lorenz Wernisch
Software Mentions: 2
Published: over 10 years ago
10.3390/e21080802
A Clustering Approach for Motif Discovery in ChIP-Seq DatasetCited by: 3
Author(s): Chengjie Sun, Yang Yu, Hua Wang, Wenhu Wang
Software Mentions: 1
Published: about 5 years ago
10.1186/s13059-020-02051-x
SWISS: multiplexed orthogonal genome editing in plants with a Cas9 nickase and engineered CRISPR RNA scaffoldsCited by: 33
Author(s): Chao Li, Yuan Zong, Shuai Jin, Haocheng Zhu, Dexing Lin, Shengnan Li, Jian Qiu, Yanpeng Wang, Caixia Gao
Software Mentions: 1
Published: over 4 years ago
10.1186/s13059-020-02137-6
sgBE: a structure-guided design of sgRNA architecture specifies base editing window and enables simultaneous conversion of cytosine and adenosineCited by: 14
Author(s): Yanhong Wang, Lifang Zhou, Rui Tao, Nan Liu, Jie Long, Feng Qin, Wenling Tang, Yanfei Yang, Qiang Chen, Su Yao
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-017-08584-9
ATF3 negatively regulates cellular antiviral signaling and autophagy in the absence of type I interferonsCited by: 22
Author(s): Vikas Sood, Kiran Bala Sharma, Vishal Gupta, Dhurjhoti Saha, Parashar Dhapola, Manish Sharma, Utsav Sen, Shigetaka Kitajima, Shantanu Chowdhury, Manjula Kalia, Sudhanshu Vrati
Software Mentions: 1
Published: about 7 years ago
10.1155/2016/4986707
PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data SetsCited by: 6
Author(s): Qiang Yu, Hongwei Huo, Di Feng
Software Mentions: 1
Published: over 8 years ago
10.1155/2015/218068
A Fast Cluster Motif Finding Algorithm for ChIP-Seq Data SetsCited by: 5
Author(s): Yipu Zhang, Ping Wang
Software Mentions: 1
Published: over 9 years ago