Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-15-1047

https://doi.org/10.1186/1471-2164-15-1047

De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Cited by: 13
Author(s): Meng Niu, Ehsan Tabari, Zhengchang Su
Published: about 10 years ago

Software Mentions 4

cran: CMF
Collective Matrix Factorization
Papers that mentioned: 4
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
pypi: STEME
STEME: an accurate efficient motif finder for large data sets.
Papers that mentioned: 16