bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
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bioconductor: genomation
Summary, annotation and visualization of genomic dataPapers that mentioned: 17
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pypi: compass
Compass is a geolocation API client library offering you a flexible set of lookup strategies across a range of web services.Papers that mentioned: 17
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bioconductor: tilingArray
Transcript mapping with high-density oligonucleotide tiling arraysPapers that mentioned: 17
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bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq dataPapers that mentioned: 17
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cran: JMbayes
Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian ApproachPapers that mentioned: 17
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cran: NB
Maximum Likelihood method in estimating effective population size from genetic dataPapers that mentioned: 17
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pypi: NiftyNet
An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapyPapers that mentioned: 17
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pypi: science
Papers that mentioned: 17
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cran: lpSolve
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer ProgramsPapers that mentioned: 17
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cran: SGL
Fit a GLM (or Cox Model) with a Combination of Lasso and Group Lasso RegularizationPapers that mentioned: 17
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pypi: QUIT
Papers that mentioned: 17
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bioconductor: RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulonsPapers that mentioned: 17
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cran: PEACH
Pareto Enrichment Analysis for Combining Heterogeneous DatasetsPapers that mentioned: 17
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bioconductor: MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPapers that mentioned: 17
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cran: uwot
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality ReductionPapers that mentioned: 17
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pypi: EggLib
EggLib is software package offering a wide array of tools for automated population genetics and genomics analyses.Papers that mentioned: 17
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pypi: CRADLE
Correct Read Counts and Analysis of Differently Expressed RegionsPapers that mentioned: 17
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pypi: Loupe
A Python library for solving parametric optimization problems with built-in autograd.Papers that mentioned: 17
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cran: SK
Segment-Based Ordinary Kriging and Segment-Based Regression Kriging for Spatial PredictionPapers that mentioned: 17
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cran: ROCit
Performance Assessment of Binary Classifier with VisualizationPapers that mentioned: 17
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pypi: tuxedo
Python3 bindings for writing Oracle Tuxedo clients and serversPapers that mentioned: 17
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pypi: match
Match tokenized words and phrases within the original, untokenized, often messy, text.Papers that mentioned: 17
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pypi: pysamstats
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.Papers that mentioned: 17
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pypi: IMDb
Module to query the Internet Movie Database, http://www.imdb.com/Papers that mentioned: 17
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cran: irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse MatricesPapers that mentioned: 16
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pypi: STEME
STEME: an accurate efficient motif finder for large data sets.Papers that mentioned: 16
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cran: AUCRF
Variable Selection with Random Forest and the Area Under the CurvePapers that mentioned: 16
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pypi: Toucan
A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and morePapers that mentioned: 16
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pypi: igv
Jupyter extension for embedding the genome visualation igv.js in a notebookPapers that mentioned: 16
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