Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: lpSolve
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer ProgramsPapers that mentioned: 17
cran: SK
Segment-Based Ordinary Kriging and Segment-Based Regression Kriging for Spatial PredictionPapers that mentioned: 17
pypi: EggLib
EggLib is software package offering a wide array of tools for automated population genetics and genomics analyses.Papers that mentioned: 17
pypi: match
Match tokenized words and phrases within the original, untokenized, often messy, text.Papers that mentioned: 17
bioconductor: genomation
Summary, annotation and visualization of genomic dataPapers that mentioned: 17
cran: NB
Maximum Likelihood method in estimating effective population size from genetic dataPapers that mentioned: 17
bioconductor: RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulonsPapers that mentioned: 17
bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq dataPapers that mentioned: 17
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
pypi: IMDb
Module to query the Internet Movie Database, http://www.imdb.com/Papers that mentioned: 17
bioconductor: MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPapers that mentioned: 17
pypi: pysamstats
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.Papers that mentioned: 17
pypi: Loupe
A Python library for solving parametric optimization problems with built-in autograd.Papers that mentioned: 17
pypi: compass
Compass is a geolocation API client library offering you a flexible set of lookup strategies across a range of web services.Papers that mentioned: 17
pypi: NiftyNet
An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapyPapers that mentioned: 17
pypi: tuxedo
Python3 bindings for writing Oracle Tuxedo clients and serversPapers that mentioned: 17
cran: irtoys
A Collection of Functions Related to Item Response Theory (IRT)Papers that mentioned: 17
cran: uwot
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality ReductionPapers that mentioned: 17
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data FormatPapers that mentioned: 17
pypi: pyseer
Papers that mentioned: 17pypi: CRADLE
Correct Read Counts and Analysis of Differently Expressed RegionsPapers that mentioned: 17
cran: PEACH
Pareto Enrichment Analysis for Combining Heterogeneous DatasetsPapers that mentioned: 17
cran: JMbayes
Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian ApproachPapers that mentioned: 17
cran: ROCit
Performance Assessment of Binary Classifier with VisualizationPapers that mentioned: 17
bioconductor: IsoformSwitchAnalyzeR
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq dataPapers that mentioned: 16
cran: irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse MatricesPapers that mentioned: 16
bioconductor: snapCGH
Segmentation, normalisation and processing of aCGH dataPapers that mentioned: 16
bioconductor: SLqPCR
Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbHPapers that mentioned: 16