Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: summarize
https://packages.ecosyste.ms/registries/pypi.org/packages/summarize
A simple summarize tool
1 version
Latest release: over 1 year ago
Papers Mentioning summarize 17
10.7717/peerj.1845
A molecular classification of human mesenchymal stromal cellsCited by: 42
Author(s): Florian Rohart, Elizabeth A. Mason, Nicholas Matigian, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Suzanne Butcher, Jatin Patel, Kerry Atkinson, Kiarash Khosrotehrani, Nicholas M. Fisk, Kim‐Anh Lê Cao, Christine A. Wells
Software Mentions: 10
Published: over 8 years ago
10.1186/s12859-020-3389-x
ushr: Understanding suppression of HIV in RCited by: 3
Author(s): Sinead E. Morris, Luise Dziobek-Garrett, Andrew J. Yates
Software Mentions: 8
Published: almost 5 years ago
10.1038/srep21969
Culex quinquefasciatus larval microbiomes vary with instar and exposure to common wastewater contaminantsCited by: 27
Author(s): Marcus J. Pennington, Sean M. Prager, William E. Walton, John T. Trumble
Software Mentions: 6
Published: over 8 years ago
10.1186/s13059-017-1299-7
Comprehensive benchmarking and ensemble approaches for metagenomic classifiersCited by: 235
Author(s): Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail Rosen, Christopher E. Mason
Software Mentions: 5
Published: about 7 years ago
10.1038/s41598-020-76769-w
GIANT: galaxy-based tool for interactive analysis of transcriptomic dataCited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: about 4 years ago
10.7717/peerj.3246
Microbial communities in sediment from <i>Zostera marina</i> patches, but not the <i>Z. marina</i> leaf or root microbiomes, vary in relation to distance from patch edgeCited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: over 7 years ago
10.1128/mSphere.00194-18
Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial CommunityCited by: 19
Author(s): Adit Chaudhary, Imrose Kauser, Anirban Ray, Rachel Poretsky
Software Mentions: 4
Published: about 6 years ago
10.12688/f1000research.12302.1
BAT: Bisulfite Analysis ToolkitCited by: 12
Author(s): Helene Kretzmer, Christian Otto, Steve Hoffmann
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2018.00623
Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific OceanCited by: 37
Author(s): Yingdong Li, Hongmei Jing, Xiaomin Xia, Shunyan Cheung, Koji Suzuki, Hongbin Liu
Software Mentions: 2
Published: over 6 years ago
10.1186/s40168-015-0080-y
Cross-fostering immediately after birth induces a permanent microbiota shift that is shaped by the nursing motherCited by: 58
Author(s): Joseph G. Daft, Travis Ptacek, Ranjit Kumar, Casey D. Morrow, Robin G. Lorenz
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0047986
Maternal Diets Trigger Sex-Specific Divergent Trajectories of Gene Expression and Epigenetic Systems in Mouse PlacentaCited by: 155
Author(s): Anne Gabory, Laure Ferry, I. Fajardy, Luc Jouneau, Jean David Gothie Gothié, Alexandre Vigé, Cecile Fleur, Sylvain Mayeur, Catherine Gallou-Kabani, Marie-Sylvie Gross, Linda Attig, A. Vambergue, Jean Lésage, Brigitte Reusens, Didier Vieau, Claude Remacle, Jean-Philippe Jaı̈s, Claudine Junien
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pcbi.0030196
Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural ProgenitorsCited by: 98
Author(s): G Yeo, Xiangdong Xu, Tiffany Y. Liang, Alysson R. Muotri, Christian T. Carson, Nicole G. Coufal, Fred H. Gage
Software Mentions: 1
Published: about 17 years ago
10.7717/peerj.2492
A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeqCited by: 59
Author(s): Catherine Burke, Aaron E. Darling
Software Mentions: 1
Published: about 8 years ago
10.3390/microorganisms7100414
Oncogenic Virome Benefits from the Different Vaginal Microbiome-Immune AxesCited by: 9
Author(s): Giuseppina Campisciano, Tarik Gheit, Francesco De Seta, Carolina Cason, Nunzia Zanotta, Serena Delbue, Giuseppe Ricci, Pasquale Ferrante, Massimo Tommasino, Manola Comar
Software Mentions: 1
Published: about 5 years ago
10.1186/s12983-018-0262-0
Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the ColeopteraCited by: 30
Author(s): Dominik Kusy, Michal Motyka, Carmelo Andújar, Matěj Boček, Michal Mášek, Katerina Sklenarova, Filip Kokáš, Milada Bocáková, Alfried P. Vogler, Ladislav Bocák
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0176559
Crude oil impairs immune function and increases susceptibility to pathogenic bacteria in southern flounderCited by: 33
Author(s): Keith M. Bayha, Natalie Ortell, Caitlin N. Ryan, Kimberly J. Griffitt, Michelle O. Krasnec, Johnny A. Sena, Thiruvarangan Ramaraj, Ryan Takeshita, Gregory D. Mayer, Faye Schilkey, Robert J. Griffitt
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0184547
Methanobrevibacter attenuation via probiotic intervention reduces flatulence in adult human: A non-randomised paired-design clinical trial of efficacyCited by: 20
Author(s): Minseok Seo, Jae-Young Heo, Joon Yoon, Seyoung Kim, Yoon-Mo Kang, Jihyun Yu, Seoae Cho, Heebal Kim
Software Mentions: 1
Published: about 7 years ago