Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-017-1299-7
https://doi.org/10.1186/s13059-017-1299-7
Cited by: 235
Author(s): Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail Rosen, Christopher E. Mason
Published: over 6 years ago
Software Mentions 5
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascriptPapers that mentioned: 1,819
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.Papers that mentioned: 848
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306