Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MAIT

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MAIT

Statistical Analysis of Metabolomic Data
1 version
Latest release: 12 months ago
18,840 downloads total

Papers Mentioning MAIT 16

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago

10.1186/s12859-017-1579-y

metaX: a flexible and comprehensive software for processing metabolomics data
Cited by: 402
Author(s): Bo Wen, Zhanlong Mei, Chunwei Zeng, Siqi Liu
Software Mentions: 11
Published: over 7 years ago

10.1186/s12859-020-03786-x

IP4M: an integrated platform for mass spectrometry-based metabolomics data mining
Cited by: 32
Author(s): Dandan Liang, Quan Liu, Kejun Zhou, Jia Wang, Guoxiang Xie, Tianlu Chen
Software Mentions: 11
Published: about 4 years ago

10.21105/joss.02410

Viime: Visualization and Integration of Metabolomics Experiments
Cited by: 6
Author(s): Roni Choudhury, Jon Beezley, Brandon Davis, Jared Tomeck, Samuel Gratzl, Lilian Golzarri‐Arroyo, Jun Wan, Daniel Raftery, Jeff Baumes, Thomas M. O’Connell
Software Mentions: 6
Published: almost 4 years ago

10.3390/metabo9030057

MetaboAnalystR 2.0: From Raw Spectra to Biological Insights
Cited by: 229
Author(s): Jasmine Chong, Masato Yamamoto, Jianguo Xia
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-019-2848-8

ROIMCR: a powerful analysis strategy for LC-MS metabolomic datasets
Cited by: 55
Author(s): Eva Gorrochategui, Joaquim Jaumot, Romà Tauler
Software Mentions: 3
Published: over 5 years ago

10.1038/s42003-021-02610-3

NetTCR-2.0 enables accurate prediction of TCR-peptide binding by using paired TCRα and β sequence data
Cited by: 80
Author(s): Alessandro Montemurro, Viktoria Schuster, Helle Rus Povlsen, Amalie Kai Bentzen, Vanessa Isabell Jurtz, William D. Chronister, Austin Crinklaw, Sine Reker Hadrup, Ole Winther, Bjoern Peters, Leon Eyrich Jessen, Morten Nielsen
Software Mentions: 3
Published: about 3 years ago

10.1186/s12859-018-2487-5

FELLA: an R package to enrich metabolomics data
Cited by: 51
Author(s): Sergio Picart‐Armada, Francesc Fernández-Albert, María Vinaixa, Óscar Yanes, Alexandre Perera-Lluna
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-15-319

Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes
Cited by: 6
Author(s): Brian G. Pierce, Thom Vreven, Zhiping Weng
Software Mentions: 2
Published: about 10 years ago

10.3389/fimmu.2020.579743

Unbiased Profiling Reveals Compartmentalization of Unconventional T-Cells Within the Intestinal Mucosa Irrespective of HIV Infection
Cited by: 6
Author(s): Magalli Magnoumba, Abhijeet Singh, Paul Ogongo, Julia Roider, Osaretin E. Asowata, Michael G. Fehlings, Farina Karim, Thumbi Ndung’u, Frank Anderson, Alasdair Leslie, Henrik N. Kløverpris
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2017.00551

Bioactivity in Rhododendron: A Systemic Analysis of Antimicrobial and Cytotoxic Activities and Their Phylogenetic and Phytochemical Origins
Cited by: 19
Author(s): Anne Grimbs, Abhinandan Shrestha, Ahmed Rezk, Sergio Grimbs, Inamullah Hakeem Said, Hartwig Schepker, Marc‐Thorsten Hütt, Dirk C. Albach, Klaudia Brix, Nikolai Kuhnert, Matthias S. Ullrich
Software Mentions: 2
Published: over 7 years ago

10.3390/toxics7030041

Towards Mass Spectrometry-Based Chemical Exposome: Current Approaches, Challenges, and Future Directions
Cited by: 25
Author(s): Jingchuan Xue, Yunjia Lai, Youfu Li, Hongyu Ru
Software Mentions: 2
Published: about 5 years ago

10.4049/jimmunol.1900674

MR1-Independent Activation of Human Mucosal-Associated Invariant T Cells by Mycobacteria
Cited by: 49
Author(s): Sara Suliman, Melissa Murphy, Munyaradzi Musvosvi, Anele Gela, Erin W. Meermeier, Hennie Geldenhuys, Christiaan Hopley, Asma Toefy, Nicole Bilek, Ashley Veldsman, Willem A. Hanekom, John L. Johnson, W. Henry Boom, Gerlinde Obermoser, Huang Huang, Mark Hatherill, David Lewinsohn, Elisa Nemes, Thomas J. Scriba
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0189012

Null diffusion-based enrichment for metabolomics data
Cited by: 25
Author(s): Sergio Picart‐Armada, Francesc Fernández-Albert, María Vinaixa, Miguel A. Rodrı́guez, Suvi Aivio, Travis H. Stracker, Óscar Yanes, Alexandre Perera-Lluna
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12906-020-03067-3

NMR and LCMS analytical platforms exhibited the nephroprotective effect of Clinacanthus nutans in cisplatin-induced nephrotoxicity in the in vitro condition
Cited by: 10
Author(s): Ilya Iryani Mahmod, Intan Safinar Ismail, Noorjahan Banu Mohamed Alitheen, Yahaya M. Normi, Faridah Abas, Alfi Khatib, . Rudiyanto, Jalifah Latip
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12859-015-0462-y

Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction
Cited by: 28
Author(s): A. Ranjitha Dhanasekaran, Jon L Pearson, Balasubramanian Ganesan, Bart C. Weimer
Software Mentions: 1
Published: over 9 years ago