Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: RTN

https://packages.ecosyste.ms/registries/bioconductor.org/packages/RTN

RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
1 version
Latest release: about 1 year ago
3 dependent packages
26,119 downloads total

Papers Mentioning RTN 17

NF1 regulates mesenchymal glioblastoma plasticity and aggressiveness through the AP-1 transcription factor FOSL1
Cited by: 36
Author(s): Carolina Marques, Thomas Unterkircher, Paula Kroon, Barbara Oldrini, Annalisa Izzo, Yuliia Dramaretska, Roberto Ferrarese, Eva Kling, Oliver Schnell, Sven Nelander, Erwin F. Wagner, Latifa Bakiri, Gaetano Gargiulo, Maria Stella Carro, Massimo Squatrito
Software Mentions: 11
Published: over 3 years ago

10.1002/cam4.2493

Integrated transcriptomics reveals master regulators of lung adenocarcinoma and novel repositioning of drug candidates
Cited by: 12
Author(s): Marco Antônio De Bastiani, Fábio Klamt
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pmed.1002223

Master Regulators of Oncogenic KRAS Response in Pancreatic Cancer: An Integrative Network Biology Analysis
Cited by: 38
Author(s): Shivan Sivakumar, Inês de Santiago, L Chlon, Florian Markowetz
Software Mentions: 8
Published: almost 8 years ago

10.1186/s13068-021-01948-4

Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids
Cited by: 6
Author(s): Jose J De Vega, Ned Peel, Sarah Purdy, Sarah Hawkins, Iain S. Donnison, Sarah Dyer, Kerrie Farrar
Software Mentions: 6
Published: over 3 years ago

10.1038/srep29832

Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells
Cited by: 7
Author(s): Stephen Smith, Cinzia G. Scarpini, Ian J. Groves, Richard Odle, Nicholas Coleman
Software Mentions: 4
Published: over 8 years ago

10.18632/aging.102579

Discovering master regulators in hepatocellular carcinoma: one novel MR, SEC14L2 inhibits cancer cells
Cited by: 14
Author(s): Zhihui Li, Yi Liu, Guoyan Tian, Jianyue Wu, Anqian Lu, Jin Chen, Beibei Xu, Junping Shi, Jin Yang
Software Mentions: 4
Published: almost 5 years ago

10.3390/jpm11020138

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma
Cited by: 6
Author(s): Yigit Koray Babal, B. Kandemir, Işıl Aksan Kurnaz
Software Mentions: 3
Published: almost 4 years ago

10.1155/2020/9780981

Integrated Analysis Identifies an Immune-Based Prognostic Signature for the Mesenchymal Identity in Gastric Cancer
Cited by: 3
Author(s): Dongzhu Peng, Bin Gu, Li-Ming Ruan, Xingguo Zhang, Ping Shu
Software Mentions: 3
Published: over 4 years ago

10.3389/fphar.2018.00697

Master Regulators Connectivity Map: A Transcription Factors-Centered Approach to Drug Repositioning
Cited by: 16
Author(s): Marco Antônio De Bastiani, Bianca Pfaffenseller, Fábio Klamt
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.570546

A Systems Biology Approach to Identifying a Master Regulator That Can Transform the Fast Growing Cellular State to a Slowly Growing One in Early Colorectal Cancer Development Model
Cited by: 3
Author(s): Ji-Hye Choi, Jeong-Ryeol Gong, Chae Young Hwang, Chang Young Joung, Soobeom Lee, Kwang-Hyun Cho
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers13081860

Reverse Engineering of Ewing Sarcoma Regulatory Network Uncovers PAX7 and RUNX3 as Master Regulators Associated with Good Prognosis
Cited by: 8
Author(s): Marcel da Câmara Ribeiro Dantas, Danilo Oliveira Imparato, Matheus Gibeke Siqueira Dalmolin, Caroline Brunetto de Farias, André T. Brunetto, Mariane da Cunha Jaeger, Rafaël Roesler, Marialva Sinigaglia, Rodrigo Juliani Siqueira Dalmolin
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22052420

Novel lncRNAs Co-Expression Networks Identifies LINC00504 with Oncogenic Role in Luminal A Breast Cancer Cells
Cited by: 4
Author(s): Carolina Mathias, Clarice S. Groeneveld, Sheyla Trefflich, Érika Pereira Zambalde, Rubens Silveira de Lima, Cícero Úrban, Karin Braun-Prado, Enilze M.S.F. Ribeiro, Mauro A. A. Castro, Juliana Gomes Ramalho de Oliveira
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0082457

Reverse Engineering the Neuroblastoma Regulatory Network Uncovers MAX as One of the Master Regulators of Tumor Progression
Cited by: 13
Author(s): Ricardo D’Oliveira Albanus, Rodrigo Juliani Siqueira Dalmolin, Mauro A. A. Castro, Matheus Augusto de Bittencourt Pasquali, Vitor de Miranda Ramos, Daniel Pens Gelain, José Cláudio Fonseca Moreira
Software Mentions: 2
Published: almost 11 years ago

10.3390/genes11020155

A Network-Based Approach for Identification of Subtype-Specific Master Regulators in Pancreatic Ductal Adenocarcinoma
Cited by: 7
Author(s): Yuchen Zhang, Lina Zhu, Xin Wang
Software Mentions: 1
Published: almost 5 years ago

10.1590/1678-4685-GMB-2020-0153

So alike yet so different. Differential expression of the long non-coding RNAs NORAD and HCG11 in breast cancer subtypes
Cited by: 5
Author(s): Carolina Mathias, Gabrielle Araújo Pedroso, Fernanda Rezende Pabst, Rubens Silveira de Lima, Fusakuni Kuroda, Iglenir João Cavalli, Jaqueline Carvalho de Oliveira, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.24621

Esophageal squamous cell carcinoma transcriptome reveals the effect of <i>FOXM1</i> on patient outcome through novel PIK3R3 mediated activation of PI3K signaling pathway
Cited by: 19
Author(s): Pedro Nicolau-Neto, Nathalia Meireles Da Costa, Paulo Thiago de Souza Santos, Isabela Martins Gonzaga, Maria Aparecida Ferreira, Simone Guaraldi, Miguel Ângelo Martins Moreira, Héctor N. Seuánez, Lilian Brewer, Anke Bergmann, Mariana Boroni, André Luiz Mencalha, Cléber Dario Pinto Kruel, Sheila Coelho Soares Lima, Dominic Esposito, Tatiana de Almeida Simão, Luís Felipe Ribeiro Pinto
Software Mentions: 1
Published: over 6 years ago

10.3390/s20123606

C2DAN: An Improved Deep Adaptation Network with Domain Confusion and Classifier Adaptation
Cited by: 8
Author(s): Han Sun, Xinyi Chen, Ling Wang, Dong Liang, Ningzhong Liu, Huiyu Zhou
Software Mentions: 1
Published: over 4 years ago