Papers: 10.1371/journal.pmed.1002223

https://doi.org/10.1371/journal.pmed.1002223

Master Regulators of Oncogenic KRAS Response in Pancreatic Cancer: An Integrative Network Biology Analysis

Cited by: 38
Author(s): Shivan Sivakumar, Inês de Santiago, L Chlon, Florian Markowetz
Published: over 9 years ago

Software Mentions 8

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
Very Likely Science (98)
bioconductor: affyPLM
Methods for fitting probe-level models
Papers that mentioned: 162
Very Likely Science (100)
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
Papers that mentioned: 17
Very Likely Science (100)
bioconductor: viper
Virtual Inference of Protein-activity by Enriched Regulon analysis
Papers that mentioned: 9
Very Likely Science (100)
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
Very Likely Science (90)
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
Very Likely Science (100)