Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: viper
https://packages.ecosyste.ms/registries/bioconductor.org/packages/viper
Virtual Inference of Protein-activity by Enriched Regulon analysis
1 version
Latest release: about 1 year ago
7 dependent packages
49,585 downloads total
Papers Mentioning viper 9
10.7717/peerj.10469
BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysisCited by: 5
Author(s): Daniel Dimitrov, Quan Gu
Software Mentions: 12
Published: almost 4 years ago
10.1186/s13045-020-00941-y
A single-cell survey of cellular hierarchy in acute myeloid leukemiaCited by: 39
Author(s): Jinliang Wu, Yanyu Xiao, Jie Sun, Huiyu Sun, Haide Chen, Yuanyuan Zhu, Haidong Fu, Chengxuan Yu, E Weigao, Shih‐Wei Lai, Lifeng Ma, Jiaqi Li, Lijiang Fei, Mengmeng Jiang, Jingjing Wang, Fang Ye, Renying Wang, Ziyu Zhou, Guodong Zhang, Tingyue Zhang, Qiong Ding, Zou Wang, Sheng Hao, Lizhen Liu, Weiyan Zheng, Jingsong He, Weijia Huang, Yungui Wang, Jin Xie, Tiefeng Li, Tao Cheng, Xiaoping Han, He Huang, Guoji Guo
Software Mentions: 9
Published: about 4 years ago
10.1371/journal.pmed.1002223
Master Regulators of Oncogenic KRAS Response in Pancreatic Cancer: An Integrative Network Biology AnalysisCited by: 38
Author(s): Shivan Sivakumar, Inês de Santiago, L Chlon, Florian Markowetz
Software Mentions: 8
Published: almost 8 years ago
10.1371/journal.pcbi.1008354
Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout linesCited by: 5
Author(s): Chen Xie, Cemalettin Bekpen, Sven Künzel, Maryam Keshavarz, Rebecca Krebs-Wheaton, Neva Škrabar, Kristian K. Ullrich, Wenyu Zhang, Diethard Tautz
Software Mentions: 7
Published: about 4 years ago
10.3390/genes11020226
Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1Cited by: 10
Author(s): Jineta Banerjee, Robert J. Allaway, Jaclyn N. Taroni, Aaron Baker, Xiaochun Zhang, Chang In Moon, Christine A. Pratilas, Jaishri O. Blakeley, Justin Guinney, Angela C. Hirbe, Casey S. Greene
Software Mentions: 7
Published: almost 5 years ago
10.3389/fimmu.2021.705646
On Deep Landscape Exploration of COVID-19 Patients Cells and Severity MarkersCited by: 9
Author(s): Aarón Vázquez-Jiménez, Ugo Enrique Avila-Ponce De León, Meztli Matadamas-Guzmán, Erick Andrés Muciño-Olmos, Yoscelina Estrella Martínez-López, Thelma Escobedo-Tapia, Osbaldo Reséndis-Antonio
Software Mentions: 6
Published: about 3 years ago
10.1186/s12920-020-00800-2
TOP2A and CENPF are synergistic master regulators activated in cervical cancerCited by: 17
Author(s): Beiwei Yu, Long Chen, Weina Zhang, Yue Li, Yibiao Zhang, Yuan Gao, Xianlin Teng, Libo Zou, Qian Wang, Huiying Jia, Xiangtao Liu, Hui Zheng, Ping Hou, Hongyan Yu, Ying Sun, Zhiqin Zhang, Ping Zhang, Liqin Zhang
Software Mentions: 4
Published: about 4 years ago
10.3390/cells8121556
Influence of Liver Fibrosis on Lobular ZonationCited by: 39
Author(s): Ahmed Ghallab, Maiju Myllys, Christian H. Holland, Ayham Zaza, Walaa Murad, Reham Hassan, Yasser A. Ahmed, Tahany Abbas, Eman A. Abdelrahim, Kai Markus Schneider, Madlen Matz‐Soja, Jörg Reinders, Rolf Gebhardt, Marie‐Luise Berres, Maximilian Hatting, Dirk Drasdo, Julio Sáez-Rodríguez, Christian Trautwein, Jan G. Hengstler
Software Mentions: 2
Published: almost 5 years ago
10.3389/fgene.2019.01180
Master Regulators of Signaling Pathways: An Application to the Analysis of Gene Regulation in Breast CancerCited by: 17
Author(s): Diana Tapia-Carrillo, Hugo Tovar, Tadeo Enrique Velazquez-Caldelas, Enrique Hernández‐Lemus
Software Mentions: 1
Published: almost 5 years ago