Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: EggLib

https://packages.ecosyste.ms/registries/pypi.org/packages/EggLib

EggLib is software package offering a wide array of tools for automated population genetics and genomics analyses.
7 versions
Latest release: over 1 year ago
121 downloads last month

Papers Mentioning EggLib 17

10.1093/molbev/msu269
Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
Cited by: 488
Author(s): Simon H. Martin, John W. Davey, Chris D. Jiggins
Software Mentions: 10
Published: about 10 years ago
10.1111/mec.15120
Lineage specific histories of <i>Mycobacterium tuberculosis</i> dispersal in Africa and Eurasia
Cited by: 69
Author(s): Mary O’Neill, Abigail C. Shockey, Alex Zarley, William Aylward, Vegard Eldholm, Andrew Kitchen, Caitlin S. Pepperell
Software Mentions: 9
Published: over 5 years ago
10.1186/1471-2156-13-27
EggLib: processing, analysis and simulation tools for population genetics and genomics
Cited by: 139
Author(s): Stéphane De Mita, Mathieu Siol
Software Mentions: 6
Published: almost 13 years ago
10.1128/mSphere.00511-17
Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus
Cited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Software Mentions: 5
Published: almost 7 years ago
10.1111/mec.13247
High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
Cited by: 53
Author(s): Antonia G. P. Ford, Kanchon K. Dasmahapatra, Lukas Rüber, Karim Gharbi, Timothée Cézard, Julia J. Day
Software Mentions: 5
Published: over 9 years ago
10.1002/ece3.1305
Challenges in analysis and interpretation of microsatellite data for population genetic studies
Cited by: 269
Author(s): Alexander I. Putman, Ignazio Carbone
Software Mentions: 4
Published: about 10 years ago
10.1186/s12864-015-1266-1
Genetic diversity and trait genomic prediction in a pea diversity panel
Cited by: 80
Author(s): Judith Burstin, Pauline Salloignon, Marianne Chabert-Martinello, Jean Bernard Magnin-Robert, Mathieu Siol, Françoise Jacquin, Aurélie Chauveau, Caroline Pont, Grégoire Aubert, Catherine Delaitre, Caroline Truntzer, Gérard Duc
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pgen.1007796
Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution
Cited by: 74
Author(s): Steven M. Van Belleghem, Carl Vangestel, Katrien De Wolf, Zoë De Corte, Markus Möst, Pasi Rastas, Luc De Meester, Frederik Hendrickx
Software Mentions: 3
Published: about 6 years ago
10.1534/g3.117.043471
Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
Cited by: 34
Author(s): Mathieu Siol, Françoise Jacquin, Marianne Chabert-Martinello, Petr Smýkal, Marie‐Christine Le Paslier, Grégoire Aubert, Judith Burstin
Software Mentions: 3
Published: over 7 years ago
10.1093/gbe/evt199
The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus
Cited by: 40
Author(s): Lex E. Flagel, John H. Willis
Software Mentions: 3
Published: almost 11 years ago
10.1093/gbe/evx241
Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity
Cited by: 40
Author(s): Vanessa Bueno-Sancho, Antoine Persoons, Amelia Hubbard, Luis Enrique Cabrera-Quio, Clare M. Lewis, Pilar Corredor‐Moreno, Daniel C. E. Bunting, Sajid Ali, Soonie Chng, David Hodson, Ricardo Madariaga Burrows, R. J. Bryson, Jane Thomas, Sarah Holdgate, Diane G. O. Saunders
Software Mentions: 2
Published: about 7 years ago
10.1186/s13059-017-1346-4
The interplay of demography and selection during maize domestication and expansion
Cited by: 158
Author(s): Li Wang, Timothy Beissinger, Anne Lorant, Claudia Ross-Ibarra, Jeffrey Ross‐Ibarra, Matthew B. Hufford
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0099581
Amount of Information Needed for Model Choice in Approximate Bayesian Computation
Cited by: 7
Author(s): Michael Stocks, Mathieu Siol, Martin Lascoux, Stéphane De Mita
Software Mentions: 1
Published: over 10 years ago
10.1093/sysbio/syt032
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
Cited by: 447
Author(s): Deren A. R. Eaton, Richard H. Ree
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-020-63973-x
Highly variable COI haplotype diversity between three species of invasive pest fruit fly reflects remarkably incongruent demographic histories
Cited by: 19
Author(s): Camiel Doorenweerd, Michael San Jose, Norman B. Barr, Luc Leblanc, Daniel Rubinoff
Software Mentions: 1
Published: over 4 years ago
10.1002/ece3.698
Origin and demographic history of the endemic Taiwan spruce (<i>Picea morrisonicola</i>)
Cited by: 5
Author(s): Sofia Bodare, Michael Stocks, Jeong-Mo Yang, Martin Lascoux
Software Mentions: 1
Published: over 11 years ago
10.3389/fpls.2014.00450
Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors
Cited by: 47
Author(s): Antoine Persoons, Emmanuelle Morin, Christine Delaruelle, Thibaut Payen, Fabien Halkett, Pascal Frey, Stéphane De Mita, Sébastien Duplessis
Software Mentions: 1
Published: about 10 years ago