Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSphere.00511-17

https://doi.org/10.1128/mSphere.00511-17

Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus

Cited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Published: almost 7 years ago

Software Mentions 5

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
pypi: CGAL
CGAL bindings, allowing to use some of the CGAL library in Python.
Papers that mentioned: 85
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: EggLib
EggLib is software package offering a wide array of tools for automated population genetics and genomics analyses.
Papers that mentioned: 17
pypi: TreeTime
TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82