pypi: CGAL | Projects | Ecosyste.ms: Papers

10.1590/1678-4685-GMB-2016-0230

Approaches for in silico finishing of microbial genome sequences
Cited by: 17
Author(s): Frederico Schmitt Kremer, Alan J. A. McBride, Luciano da Silva Pinto
Software Mentions: 8
Published: almost 7 years ago

10.12688/f1000research.27395.2

GeNePy3D: a quantitative geometry python toolbox for bioimaging
Cited by: 1
Author(s): Minh-Son Phan, Anatole Chessel
Software Mentions: 7
Published: almost 3 years ago

10.1128/mSphere.00511-17

Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus
Cited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0252036

Age-related changes in diffuse optical tomography sensitivity profiles in infancy
Cited by: 5
Author(s): Xiaoxue Fu, John E. Richards
Software Mentions: 5
Published: almost 3 years ago

10.1088/1741-2552/ab208d

Realistic volumetric-approach to simulate transcranial electric stimulation—ROAST—a fully automated open-source pipeline
Cited by: 199
Author(s): Yu Huang, Abhishek Datta, Marom Bikson, Lucas C. Parra
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1007756

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Cited by: 42
Author(s): Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi, Michael Holst, Padmini Rangamani
Software Mentions: 4
Published: about 4 years ago

10.1186/s12859-015-0818-3

misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Cited by: 11
Author(s): Xiao Zhu, Ho-fung Leung, Rongjie Wang, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
Software Mentions: 4
Published: over 8 years ago

10.1098/rsfs.2019.0119

Towards blood flow in the virtual human: efficient self-coupling of HemeLB
Cited by: 9
Author(s): J. W. S. McCullough, Robin A. Richardson, Alex Patronis, René Halver, Ryan Marshall, Martin Ruefenacht, Brian J. N. Wylie, Thomas Odaker, Michael Wiedemann, Bryn Lloyd, Esra Neufeld, Godehard Sutmann, Anthony Skjellum, Dieter Kranzlmüller, Peter V. Coveney
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0212189

Preprocessing 2D data for fast convex hull computations
Cited by: 2
Author(s): Oswaldo Cadenas, Graham M. Megson
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-015-0644-7

SuRankCo: supervised ranking of contigs in de novo assemblies
Cited by: 13
Author(s): Mathias Kuhring, Piotr Wojtek Dabrowski, Vitor C. Piro, Andreas Nitsche, Bernhard Y. Renard
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.20983

A molecular portrait of maternal sepsis from Byzantine Troy
Cited by: 32
Author(s): Alison Devault, Tatum D Mortimer, Andrew Kitchen, Henrike Kiesewetter, Jacob Enk, G. Brian Golding, John Southon, Melanie Kuch, Ana T. Duggan, William Aylward, Shea N. Gardner, Jonathan Allen, Andrew King, Gerard D. Wright, Makoto Kuroda, Kengo Kato, Derek E. G. Briggs, Gino Fornaciari, Edward C. Holmes, Hendrik N. Poinar, Caitlin S. Pepperell
Software Mentions: 4
Published: over 7 years ago

10.1140/epjds/s13688-017-0109-5

A roadmap for the computation of persistent homology
Cited by: 416
Author(s): Nina Otter, Mason A. Porter, Ulrike Tillmann, Peter Grindrod, Heather A. Harrington
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcimb.2020.00293

Lateral Gene Transfer Shapes Diversity of Gardnerella spp.
Cited by: 17
Author(s): Lindsey L. Bohr, Tatum D Mortimer, Caitlin S. Pepperell
Software Mentions: 3
Published: almost 4 years ago

10.1093/gbe/evw111

Host-Associated Genomic Features of the Novel Uncultured Intracellular PathogenCa.Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts
Cited by: 12
Author(s): Weihong Qi, Lloyd Vaughan, Pantelis Katharios, Ralph Schlapbach, Helena M. B. Seth-Smith
Software Mentions: 3
Published: about 8 years ago

10.1155/2015/986436

Shaped 3D Singular Spectrum Analysis for Quantifying Gene Expression, with Application to the Early Zebrafish Embryo
Cited by: 4
Author(s): Alexander Shlemov, Nina Golyandina, David M. Holloway, Alexander V. Spirov
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2019.00873

Mathematical Models of Organoid Cultures
Cited by: 38
Author(s): Sandra Montes-Olivas, Lucia Marucci, Martin Homer
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007855

Shape-preserving elastic solid models of macromolecules
Cited by: 3
Author(s): Guang Song
Software Mentions: 3
Published: about 4 years ago

10.3390/ma13061420

Linear Elastic FE-Analysis of Porous, Laser Welded, Heat Treatable, Aluminium High Pressure Die Castings Based on X-Ray Computed Tomography Data
Cited by: 5
Author(s): Fabian Teichmann, Arne Ziemer, Martin Leitner, Jonas Hensel, Klaus Dilger
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-15-126

Automated ensemble assembly and validation of microbial genomes
Cited by: 59
Author(s): Sergey Koren, Todd J. Treangen, Curtis Hill, Mihai Pop, Adam M. Phillippy
Software Mentions: 2
Published: about 10 years ago

10.1186/1756-0500-6-334

De novo likelihood-based measures for comparing genome assemblies
Cited by: 46
Author(s): Mohammadreza Ghodsi, Curtis Hill, Irina Astrovskaya, Henry Lin, Dan Sommer, Sergey Koren, Mihai Pop
Software Mentions: 2
Published: almost 11 years ago

10.1073/pnas.1914481117

Evidence for habitual climbing in a Pleistocene hominin in South Africa
Cited by: 20
Author(s): Leoni Georgiou, Christopher J. Dunmore, Ameline Bardo, Laura T. Buck, Jean‐Jacques Hublin, Dieter H. Pahr, Dominic Stratford, Alexander Synek, Tracy L. Kivell, Matthew M. Skinner
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-019-2779-4

Metabopolis: scalable network layout for biological pathway diagrams in urban map style
Cited by: 9
Author(s): Hsiang‐Yun Wu, Martin Nöllenburg, Filipa L. Sousa, Ivan Viola
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-05493-9

Predicting Magnetostimulation Thresholds in the Peripheral Nervous System using Realistic Body Models
Cited by: 46
Author(s): Mathias Davids, Bastien Guérin, Matthias Malzacher, Lothar R. Schad, Lawrence L. Wald
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12859-017-1789-3

Vermont: a multi-perspective visual interactive platform for mutational analysis
Cited by: 7
Author(s): Alexandre Victor Fassio, Pedro Martins, Samuel da S. Guimarães, S. A. Sócrates, Vagner S. Ribeiro, Raquel Cardoso de Melo‐Minardi, Simonton Andrade Silveira
Software Mentions: 2
Published: almost 7 years ago

10.1002/cnm.3254

Analysis of a coupled fluid‐structure interaction model of the left atrium and mitral valve
Cited by: 28
Author(s): Liuyang Feng, Hao Gao, Boyce E. Griffith, Steven Niederer, Xiaoyu Luo
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/btab280

Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics
Cited by: 5
Author(s): Marwan Abdellah, Alessandro Foni, Eleftherios Zisis, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Henry Markram, Felix Schürmann
Software Mentions: 2
Published: almost 3 years ago

10.7554/eLife.51602

Cardiac ryanodine receptor distribution is dynamic and changed by auxiliary proteins and post-translational modification
Cited by: 38
Author(s): Parisa Asghari, David R.L. Scriven, Myles Ng, Pankaj Panwar, Kuang-Chao Chou, Filip Van Petegem, Edwin D.W. Moore
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0225795

Parametric CAD modeling for open source scientific hardware: Comparing OpenSCAD and FreeCAD Python scripts
Cited by: 20
Author(s): Felipe Machado, Norberto Malpica, Susana Borromeo
Software Mentions: 2
Published: over 4 years ago

10.1186/s12915-018-0593-5

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids
Cited by: 33
Author(s): Ugo Cenci, Shannon J. Sibbald, Bruce A. Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Éric Maréchal, Malika Chabi, Christophe Djemiel, Andrew J. Roger, Eun-Soo Kim, John M. Archibald
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.01345

Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar
Cited by: 51
Author(s): Chad R. Laing, Matthew D. Whiteside, Victor P. J. Gannon
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.softx.2020.100570

CemrgApp: An interactive medical imaging application with image processing, computer vision, and machine learning toolkits for cardiovascular research
Cited by: 34
Author(s): Orod Razeghi, José Alonso Solís-Lemus, Angela W.C. Lee, Rashed Karim, Cesare Corrado, Caroline Roney, Adelaide de Vecchi, Steven Niederer
Software Mentions: 2
Published: almost 4 years ago

10.1186/1754-6834-7-40

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia
Cited by: 128
Author(s): Steven D. Brown, Shilpa Nagaraju, Sagar M. Utturkar, Sashini De Tissera, Simón Segovia, Wayne Mitchell, Miriam Land, Asela Dassanayake, Michael Kӧpke
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2020.00316

Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake
Cited by: 17
Author(s): Andrea Schnepf, Christopher K. Black, Valentin Couvreur, Benjamin Delory, Claude Doussan, Axelle Koch, Timo Koch, Mathieu Javaux, Magdalena Landl, Daniel Leitner, Guillaume Lobet, Trung Hieu, Félicien Meunier, Lukas Petrich, Johannes Postma, Eckart Priesack, Volker Schmidt, Jan Vanderborght, Harry Vereecken, Michael Weber
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2016.01739

Integrating Physiology and Architecture in Models of Fruit Expansion
Cited by: 12
Author(s): Mikolaj Cieslak, Ibrahim Cheddadi, Frédéric Boudon, Valentina Baldazzi, Michel Génard, Christophe Godin, Nadia Bertin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0018541

A Collaborative Filtering Approach for Protein-Protein Docking Scoring Functions
Cited by: 31
Author(s): Thomas Bourquard, Julie Bernauer, Jérôme Azé, Anne Poupon
Software Mentions: 2
Published: about 13 years ago

10.1186/s13059-014-0553-5

Evaluation of de novo transcriptome assemblies from RNA-Seq data
Cited by: 230
Author(s): Bo Li, Nathanael Fillmore, Yongsheng Bai, M. J. Collins, James A. Thomson, Ron Stewart, Colin N. Dewey
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/giz160

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
Cited by: 38
Author(s): Weiwen Wang, Ashutosh Das, David Kainer, Miriam Schalamun, Alejandro Morales-Suarez, Benjamin Schwessinger, Robert Lanfear
Software Mentions: 2
Published: over 4 years ago

10.1002/hbm.25272

A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources
Cited by: 50
Author(s): Maria Carla Piastra, Andreas Nüßing, Johannes Vorwerk, Maureen Clerc, Christian Engwer, Carsten H. Wolters
Software Mentions: 2
Published: over 3 years ago

10.1155/2011/923703

Forward Field Computation with OpenMEEG
Cited by: 89
Author(s): Alexandre Gramfort, Théodore Papadopoulo, Emmanuel Olivi, Maureen Clerc
Software Mentions: 2
Published: over 13 years ago

10.1038/s41598-019-48252-8

Fine-grained simulations of the microenvironment of vascularized tumours
Cited by: 6
Author(s): Thierry Fredrich, Heiko Rieger, Roberto Chignola, E. Milotti
Software Mentions: 1
Published: almost 5 years ago

10.3390/s17102342

Model-Based Real-Time Non-Rigid Tracking
Cited by: 2
Author(s): Sebastián Bronte, Luis M. Bergasa, Daniel Pizarro, Rafael Barea
Software Mentions: 1
Published: over 6 years ago

10.1152/ajpheart.00130.2016

Impact of coronary bifurcation morphology on wave propagation
Cited by: 4
Author(s): Simone Rivolo, Lucas Hadjilucas, Matthew Sinclair, Pepijn van Horssen, Jeroen P. van den Wijngaard, Roman Wesołowski, Amedeo Chiribiri, Maria Siebes, Nicolas P. Smith, Jack Lee
Software Mentions: 1
Published: over 7 years ago

10.3390/s21020412

Mesh Denoising via Adaptive Consistent Neighborhood
Cited by: 7
Author(s): Mingqiang Guo, Zhenzhen Song, Chengde Han, Zhong Su, Ruina Lv, Zheng Liu
Software Mentions: 1
Published: over 3 years ago

10.3390/s21134279

A Saliency-Based Sparse Representation Method for Point Cloud Simplification
Cited by: 9
Author(s): Esmeide Leal, Germán Sánchez-Torres, John William Branch Bedoya, Francisco Abad, Nallig Leal
Software Mentions: 1
Published: almost 3 years ago

10.1016/j.softx.2020.100454

Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using Meshtool
Cited by: 38
Author(s): Aurel Neic, Matthias A. F. Gsell, Elias Karabelas, Anton J. Prassl, Gernot Plank
Software Mentions: 1
Published: over 4 years ago

10.1186/s40064-016-3447-z

Seamless images stitching for 3D human models
Cited by: 1
Author(s): Chao Lai, Fangzhao Li, Shiyao Jin
Software Mentions: 1
Published: over 7 years ago

10.3390/s20236916

Semantic Extraction of Permanent Structures for the Reconstruction of Building Interiors from Point Clouds
Cited by: 11
Author(s): Inge Coudron, Steven Puttemans, Toon Goedemé, Patrick Vandewalle
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-020-3382-4

Toward a more holistic method of genome assembly assessment
Cited by: 18
Author(s): Adam Thrash, Federico G. Hoffmann, Andy D. Perkins
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2105-9-11

SeqAn An efficient, generic C++ library for sequence analysis
Cited by: 277
Author(s): Andreas Döring, David Weese, Tobias Rausch, Knut Reinert
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-018-5159-y

Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus
Cited by: 19
Author(s): Byoung Won Min, Seunghwan Kim, Youn Lee Oh, Won Sik Kong, Hong-Jae Park, Hee-Jung Cho, Kab Yeul Jang, Jeong Gu Kim, In Geol Choi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12880-017-0193-9

Analysis of the three-dimensional anatomical variance of the distal radius using 3D shape models
Cited by: 10
Author(s): Sebastian Felix Baumbach, Jakob Binder, Alexander Synek, Fabian Mück, Cheng Yan, Ekkehard Euler, Georg Langs, Lukas Fischer
Software Mentions: 1
Published: about 7 years ago

10.1186/1753-6561-8-S2-S4

VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation
Cited by: 4
Author(s): Simonton Andrade Silveira, Alexandre Victor Fassio, Valdete Gonçalves-Almeida, Elisa Boari de Lima, Yussif Tadeu de Barcelos, Flávia Figueira Aburjaile, Laerte M. Rodrigues, Wagner Meira, Raquel Cardoso de Melo‐Minardi
Software Mentions: 1
Published: almost 10 years ago

10.1093/bioinformatics/btu391

Evaluation and validation ofde novoand hybrid assembly techniques to derive high-quality genome sequences
Cited by: 97
Author(s): Sagar M. Utturkar, Dawn M. Klingeman, Miriam Land, Christopher W. Schadt, Mitchel J. Doktycz, Dale A. Pelletier, Steven D. Brown
Software Mentions: 1
Published: almost 10 years ago

10.1007/s10237-015-0748-z

Estimation of passive and active properties in the human heart using 3D tagged MRI
Cited by: 52
Author(s): Liya Asner, Myrianthi Hadjicharalambous, Radomír Chabiniok, Devis Peresutti, Eva Sammut, James Wong, Gerald Carr‐White, Phil Chowienczyk, Jack Lee, Andrew P. King, Nicolas P. Smith, Reza Razavi, David Nordsletten
Software Mentions: 1
Published: over 8 years ago

10.1007/s10237-019-01204-7

A quantitative high-resolution computational mechanics cell model for growing and regenerating tissues
Cited by: 31
Author(s): Paul Van Liedekerke, Johannes Neitsch, Tim Johann, Enrico Warmt, Ismael González-Valverde, Stefan Hoehme, Steffen Grosser, Josef Kaes, Dirk Drasdo
Software Mentions: 1
Published: over 4 years ago

10.3390/brainsci9080179

Computational Modeling of the Photon Transport, Tissue Heating, and Cytochrome C Oxidase Absorption during Transcranial Near-Infrared Stimulation
Cited by: 26
Author(s): Malay Bhattacharya, Anirban Dutta
Software Mentions: 1
Published: almost 5 years ago

10.3390/ma14020427

A Numerical Study of Geometry’s Impact on the Thermal and Mechanical Properties of Periodic Surface Structures
Cited by: 12
Author(s): Elżbieta Gawrońska, Robert Dyja
Software Mentions: 1
Published: over 3 years ago

10.1097/MD.0000000000023330

Bringing prevost's sign into the third dimension: Artificial intelligence estimation of conjugate gaze adjusted length (CGAL) and correlation with acute ischemic stroke
Cited by: 1
Author(s): Hillel S. Maresky, Joseph M. Rootman, Miriam M. Klar, Max Levitt, Alexander P. Kossar, David M. Zucker, Michael Glazier, Shani Kalmanovich-Avnery, Richard I. Aviv, Birgit Ertl‐Wagner, Sigal Tal
Software Mentions: 1
Published: over 3 years ago

10.1016/j.mex.2015.02.004

Efficient Voronoi volume estimation for DEM simulations of granular materials under confined conditions
Cited by: 8
Author(s): Göran Frenning
Software Mentions: 1
Published: over 9 years ago

10.1016/j.mex.2020.101061

Method for generating high-quality tetrahedral meshes of geological models by utilizing CGAL
Cited by: 7
Author(s): Bowen Wang, Gang Mei, Nengxiong Xu
Software Mentions: 1
Published: over 4 years ago

10.1016/j.mex.2021.101398

Geological surface reconstruction from 3D point clouds
Cited by: 4
Author(s): Cristina Serazio, Marco Tamburini, Francesca Verga, Stefano Berrone
Software Mentions: 1
Published: over 3 years ago

10.1038/msb.2013.43

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence
Cited by: 102
Author(s): Benjamin Péret, A. Middleton, A. P. French, Antoine Larrieu, Anthony Bishopp, Maria Njo, Darren M. Wells, Silvana Porco, Nathan Mellor, Leah R. Band, Ilda Casimiro, Jürgen Kleine‐Vehn, Steffen Vanneste, Ilkka Sairanen, Romain Mallet, Göran Sandberg, Karin Ljung, Tom Beeckman, Eva Benková, Jiřı́ Friml, Eric M. Kramer, John R. King, Ive De Smet, Tony Pridmore, Markus R. Owen, Malcolm J. Bennett
Software Mentions: 1
Published: over 11 years ago

10.1186/s42492-019-0010-0

An efficient data structure for calculation of unstructured T-spline surfaces
Cited by: 5
Author(s): Wei Wang, Yang Zhang, Xiaoxiao Du, Gang Zhao
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.5156

Trabecular bone patterning in the hominoid distal femur
Cited by: 16
Author(s): Leoni Georgiou, Tracy L. Kivell, Dieter H. Pahr, Matthew M. Skinner
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1005690

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions
Cited by: 200
Author(s): Zixuan Cang, Guowei Wei
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0190666

Fast and robust shape diameter function
Cited by: 3
Author(s): Shuangmin Chen, Taijun Liu, Zhenyu Shu, Shiqing Xin, Ying He, Changhe Tu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0013942

Emergent Properties of Tumor Microenvironment in a Real-Life Model of Multicell Tumor Spheroids
Cited by: 40
Author(s): E. Milotti, Roberto Chignola
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0149860

Preconditioning 2D Integer Data for Fast Convex Hull Computations
Cited by: 3
Author(s): Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0168916

Comparison of Safety Margin Generation Concepts in Image Guided Radiotherapy to Account for Daily Head and Neck Pose Variations
Cited by: 5
Author(s): Markus Stoll, Eva Maria Stoiber, Sarah Grimm, Jürgen Debus, Rolf Bendl, Kristina Giske
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0059744

A general and Robust Ray-Casting-Based Algorithm for Triangulating Surfaces at the Nanoscale
Cited by: 96
Author(s): Sergio Decherchi, Walter Rocchia
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0120151

Surface Reconstruction through Poisson Disk Sampling
Cited by: 5
Author(s): Wenguang Hou, Zhenlin Xu, Nan-nan Qin, Dongping Xiong, Mingyue Ding
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0228119

A flexible workflow for simulating transcranial electric stimulation in healthy and lesioned brains
Cited by: 6
Author(s): Benjamin Kalloch, Pierre‐Louis Bazin, Arno Villringer, Bernhard Sehm, Mario Hlawitschka
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0053609

Easy DNA Modeling and More with GraphiteLifeExplorer
Cited by: 30
Author(s): Samuel Hornus, Bruno Lévy, Damien Larivière, Eric Fourmentin
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0158912

Quantification of Diaphragm Mechanics in Pompe Disease Using Dynamic 3D MRI
Cited by: 30
Author(s): Katja Mogalle, Adria Perez-Rovira, Pierluigi Ciet, Stephan C.A. Wens, Pieter A. van Doorn, Harm A.W.M. Tiddens, Ans T. van der Ploeg, Marleen de Bruijne
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12987-019-0126-9

Analysis of convective and diffusive transport in the brain interstitium
Cited by: 100
Author(s): Lori Ray, Jeffrey J. Iliff, Jeffrey J. Heys
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2018.01938

The Impact of Left Atrium Appendage Morphology on Stroke Risk Assessment in Atrial Fibrillation: A Computational Fluid Dynamics Study
Cited by: 58
Author(s): Alessandro Masci, Lorenzo Barone, Luca Dedè, Marco Fedele, Corrado Tomasi, Alfio Quarteroni, Cristiana Corsi
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2018.01832

Fibrosis Microstructure Modulates Reentry in Non-ischemic Dilated Cardiomyopathy: Insights From Imaged Guided 2D Computational Modeling
Cited by: 20
Author(s): Gabriel Balaban, Brian P Halliday, Caroline Mendonça Costa, Wenjia Bai, Bradley Porter, Christopher Aldo Rinaldi, Gernot Plank, Daniel Rueckert, Sanjay Prasad, Martin J. Bishop
Software Mentions: 1
Published: over 5 years ago

10.1186/gb-2013-14-1-r8

CGAL: computing genome assembly likelihoods
Cited by: 82
Author(s): Atif Rahman, Lior Pachter
Software Mentions: 1
Published: over 11 years ago

10.1186/gb-2013-14-5-r47

REAPR: a universal tool for genome assembly evaluation
Cited by: 373
Author(s): Martin Hunt, Taisei Kikuchi, Mandy Sanders, Chris Newbold, Matthew Berriman, Thomas D. Otto
Software Mentions: 1
Published: over 11 years ago

10.1109/TBME.2020.2976924

3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic Cardiomyopathy
Cited by: 6
Author(s): Gabriel Balaban, Caroline Mendonça Costa, Bradley Porter, Brian P Halliday, Christopher A. Rinaldi, Sanjay Prasad, Gernot Plank, Tevfik F Ismail, Martin J. Bishop
Software Mentions: 1
Published: over 3 years ago

10.1098/rsfs.2015.0083

Multiphysics and multiscale modelling, data–model fusion and integration of organ physiology in the clinic: ventricular cardiac mechanics
Cited by: 170
Author(s): Radomír Chabiniok, Vicky Y. Wang, Myrianthi Hadjicharalambous, Liya Asner, Jack Lee, Maxime Sermesant, Ellen Kuhl, Alistair A. Young, Philippe Moireau, Martyn P. Nash, Dominique Chapelle, David Nordsletten
Software Mentions: 1
Published: about 8 years ago

10.1016/j.jbiomech.2020.109645

Simulating ventricular systolic motion in a four-chamber heart model with spatially varying robin boundary conditions to model the effect of the pericardium
Cited by: 55
Author(s): Marina Strocchi, Matthias A. F. Gsell, Christoph M. Augustin, Orod Razeghi, Caroline H. Roney, Anton J. Prassl, Edward J. Vigmond, Jonathan M. Behar, Justin Gould, Christopher Aldo Rinaldi, Martin J. Bishop, Gernot Plank, Steven Niederer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12968-015-0147-8

Single breath-hold 3D measurement of left atrial volume using compressed sensing cardiovascular magnetic resonance and a non-model-based reconstruction approach
Cited by: 21
Author(s): Orestis Vardoulis, Pierre Monney, Amit H. Bermano, Amir Vaxman, Craig Gotsman, Janine Schwitter, Matthias Stuber, Nikolaos Stergiopulos, Juerg Schwitter
Software Mentions: 1
Published: almost 9 years ago

10.1186/1477-5956-9-S1-S1

Prediction of DNA-binding protein based on statistical and geometric features and support vector machines
Cited by: 20
Author(s): Weiqiang Zhou, Hong Yan
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-019-45343-4

The role of three-dimensionality and alveolar pressure in the distribution and amplification of alveolar stresses
Cited by: 21
Author(s): Mauricio A. Sarabia‐Vallejos, Matías A. Zúñiga, Daniel E. Hurtado
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: CGAL

Papers Mentioning CGAL 85