Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: CGAL
https://packages.ecosyste.ms/registries/pypi.org/packages/CGAL
CGAL bindings, allowing to use some of the CGAL library in Python.
19 versions
Latest release: about 1 year ago
2,175 downloads last month
Papers Mentioning CGAL 85
10.1590/1678-4685-GMB-2016-0230
Approaches for in silico finishing of microbial genome sequencesCited by: 17
Author(s): Frederico Schmitt Kremer, Alan J. A. McBride, Luciano da Silva Pinto
Software Mentions: 8
Published: about 7 years ago
10.12688/f1000research.27395.2
GeNePy3D: a quantitative geometry python toolbox for bioimagingCited by: 1
Author(s): Minh-Son Phan, Anatole Chessel
Software Mentions: 7
Published: over 3 years ago
10.1128/mSphere.00511-17
Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticusCited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pone.0252036
Age-related changes in diffuse optical tomography sensitivity profiles in infancyCited by: 5
Author(s): Xiaoxue Fu, John E. Richards
Software Mentions: 5
Published: over 3 years ago
10.1088/1741-2552/ab208d
Realistic volumetric-approach to simulate transcranial electric stimulation—ROAST—a fully automated open-source pipelineCited by: 199
Author(s): Yu Huang, Abhishek Datta, Marom Bikson, Lucas C. Parra
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pcbi.1007756
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometriesCited by: 42
Author(s): Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi, Michael Holst, Padmini Rangamani
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-015-0818-3
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end readsCited by: 11
Author(s): Xiao Zhu, Ho-fung Leung, Rongjie Wang, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
Software Mentions: 4
Published: almost 9 years ago
10.1098/rsfs.2019.0119
Towards blood flow in the virtual human: efficient self-coupling of HemeLBCited by: 9
Author(s): J. W. S. McCullough, Robin A. Richardson, Alex Patronis, René Halver, Ryan Marshall, Martin Ruefenacht, Brian J. N. Wylie, Thomas Odaker, Michael Wiedemann, Bryn Lloyd, Esra Neufeld, Godehard Sutmann, Anthony Skjellum, Dieter Kranzlmüller, Peter V. Coveney
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0212189
Preprocessing 2D data for fast convex hull computationsCited by: 2
Author(s): Oswaldo Cadenas, Graham M. Megson
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-015-0644-7
SuRankCo: supervised ranking of contigs in de novo assembliesCited by: 13
Author(s): Mathias Kuhring, Piotr Wojtek Dabrowski, Vitor C. Piro, Andreas Nitsche, Bernhard Y. Renard
Software Mentions: 4
Published: over 9 years ago
10.7554/eLife.20983
A molecular portrait of maternal sepsis from Byzantine TroyCited by: 32
Author(s): Alison Devault, Tatum D Mortimer, Andrew Kitchen, Henrike Kiesewetter, Jacob Enk, G. Brian Golding, John Southon, Melanie Kuch, Ana T. Duggan, William Aylward, Shea N. Gardner, Jonathan Allen, Andrew King, Gerard D. Wright, Makoto Kuroda, Kengo Kato, Derek E. G. Briggs, Gino Fornaciari, Edward C. Holmes, Hendrik N. Poinar, Caitlin S. Pepperell
Software Mentions: 4
Published: almost 8 years ago
10.1140/epjds/s13688-017-0109-5
A roadmap for the computation of persistent homologyCited by: 416
Author(s): Nina Otter, Mason A. Porter, Ulrike Tillmann, Peter Grindrod, Heather A. Harrington
Software Mentions: 4
Published: about 7 years ago
10.3389/fcimb.2020.00293
Lateral Gene Transfer Shapes Diversity of Gardnerella spp.Cited by: 17
Author(s): Lindsey L. Bohr, Tatum D Mortimer, Caitlin S. Pepperell
Software Mentions: 3
Published: over 4 years ago
10.1093/gbe/evw111
Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen<i>Ca.</i>Ichthyocystis Revealed by Direct Sequencing of EpitheliocystsCited by: 12
Author(s): Weihong Qi, Lloyd Vaughan, Pantelis Katharios, Ralph Schlapbach, Helena M. B. Seth-Smith
Software Mentions: 3
Published: over 8 years ago
10.1155/2015/986436
Shaped 3D Singular Spectrum Analysis for Quantifying Gene Expression, with Application to the Early Zebrafish EmbryoCited by: 4
Author(s): Alexander Shlemov, Nina Golyandina, David M. Holloway, Alexander V. Spirov
Software Mentions: 3
Published: almost 10 years ago
10.3389/fgene.2019.00873
Mathematical Models of Organoid CulturesCited by: 38
Author(s): Sandra Montes-Olivas, Lucia Marucci, Martin Homer
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pcbi.1007855
Shape-preserving elastic solid models of macromoleculesCited by: 3
Author(s): Guang Song
Software Mentions: 3
Published: over 4 years ago
10.3390/ma13061420
Linear Elastic FE-Analysis of Porous, Laser Welded, Heat Treatable, Aluminium High Pressure Die Castings Based on X-Ray Computed Tomography DataCited by: 5
Author(s): Fabian Teichmann, Arne Ziemer, Martin Leitner, Jonas Hensel, Klaus Dilger
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2105-15-126
Automated ensemble assembly and validation of microbial genomesCited by: 59
Author(s): Sergey Koren, Todd J. Treangen, Curtis Hill, Mihai Pop, Adam M. Phillippy
Software Mentions: 2
Published: over 10 years ago
10.1186/1756-0500-6-334
De novo likelihood-based measures for comparing genome assembliesCited by: 46
Author(s): Mohammadreza Ghodsi, Curtis Hill, Irina Astrovskaya, Henry Lin, Dan Sommer, Sergey Koren, Mihai Pop
Software Mentions: 2
Published: about 11 years ago
10.1073/pnas.1914481117
Evidence for habitual climbing in a Pleistocene hominin in South AfricaCited by: 20
Author(s): Leoni Georgiou, Christopher J. Dunmore, Ameline Bardo, Laura T. Buck, Jean‐Jacques Hublin, Dieter H. Pahr, Dominic Stratford, Alexander Synek, Tracy L. Kivell, Matthew M. Skinner
Software Mentions: 2
Published: over 4 years ago
10.1186/s12859-019-2779-4
Metabopolis: scalable network layout for biological pathway diagrams in urban map styleCited by: 9
Author(s): Hsiang‐Yun Wu, Martin Nöllenburg, Filipa L. Sousa, Ivan Viola
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-017-05493-9
Predicting Magnetostimulation Thresholds in the Peripheral Nervous System using Realistic Body ModelsCited by: 46
Author(s): Mathias Davids, Bastien Guérin, Matthias Malzacher, Lothar R. Schad, Lawrence L. Wald
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-017-1789-3
Vermont: a multi-perspective visual interactive platform for mutational analysisCited by: 7
Author(s): Alexandre Victor Fassio, Pedro Martins, Samuel da S. Guimarães, S. A. Sócrates, Vagner S. Ribeiro, Raquel Cardoso de Melo‐Minardi, Simonton Andrade Silveira
Software Mentions: 2
Published: about 7 years ago
10.1002/cnm.3254
Analysis of a coupled fluid‐structure interaction model of the left atrium and mitral valveCited by: 28
Author(s): Liuyang Feng, Hao Gao, Boyce E. Griffith, Steven Niederer, Xiaoyu Luo
Software Mentions: 2
Published: about 5 years ago
10.1093/bioinformatics/btab280
Metaball skinning of synthetic astroglial morphologies into realistic mesh models for <i>in silico</i> simulations and visual analyticsCited by: 5
Author(s): Marwan Abdellah, Alessandro Foni, Eleftherios Zisis, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Henry Markram, Felix Schürmann
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.51602
Cardiac ryanodine receptor distribution is dynamic and changed by auxiliary proteins and post-translational modificationCited by: 38
Author(s): Parisa Asghari, David R.L. Scriven, Myles Ng, Pankaj Panwar, Kuang-Chao Chou, Filip Van Petegem, Edwin D.W. Moore
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0225795
Parametric CAD modeling for open source scientific hardware: Comparing OpenSCAD and FreeCAD Python scriptsCited by: 20
Author(s): Felipe Machado, Norberto Malpica, Susana Borromeo
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12915-018-0593-5
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastidsCited by: 33
Author(s): Ugo Cenci, Shannon J. Sibbald, Bruce A. Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Éric Maréchal, Malika Chabi, Christophe Djemiel, Andrew J. Roger, Eun-Soo Kim, John M. Archibald
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2017.01345
Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and SerovarCited by: 51
Author(s): Chad R. Laing, Matthew D. Whiteside, Victor P. J. Gannon
Software Mentions: 2
Published: over 7 years ago
10.1016/j.softx.2020.100570
CemrgApp: An interactive medical imaging application with image processing, computer vision, and machine learning toolkits for cardiovascular researchCited by: 34
Author(s): Orod Razeghi, José Alonso Solís-Lemus, Angela W.C. Lee, Rashed Karim, Cesare Corrado, Caroline Roney, Adelaide de Vecchi, Steven Niederer
Software Mentions: 2
Published: over 4 years ago
10.1186/1754-6834-7-40
Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant ClostridiaCited by: 128
Author(s): Steven D. Brown, Shilpa Nagaraju, Sagar M. Utturkar, Sashini De Tissera, Simón Segovia, Wayne Mitchell, Miriam Land, Asela Dassanayake, Michael Kӧpke
Software Mentions: 2
Published: over 10 years ago
10.3389/fpls.2020.00316
Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water UptakeCited by: 17
Author(s): Andrea Schnepf, Christopher K. Black, Valentin Couvreur, Benjamin Delory, Claude Doussan, Axelle Koch, Timo Koch, Mathieu Javaux, Magdalena Landl, Daniel Leitner, Guillaume Lobet, Trung Hieu, Félicien Meunier, Lukas Petrich, Johannes Postma, Eckart Priesack, Volker Schmidt, Jan Vanderborght, Harry Vereecken, Michael Weber
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2016.01739
Integrating Physiology and Architecture in Models of Fruit ExpansionCited by: 12
Author(s): Mikolaj Cieslak, Ibrahim Cheddadi, Frédéric Boudon, Valentina Baldazzi, Michel Génard, Christophe Godin, Nadia Bertin
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0018541
A Collaborative Filtering Approach for Protein-Protein Docking Scoring FunctionsCited by: 31
Author(s): Thomas Bourquard, Julie Bernauer, Jérôme Azé, Anne Poupon
Software Mentions: 2
Published: over 13 years ago
10.1186/s13059-014-0553-5
Evaluation of de novo transcriptome assemblies from RNA-Seq dataCited by: 230
Author(s): Bo Li, Nathanael Fillmore, Yongsheng Bai, M. J. Collins, James A. Thomson, Ron Stewart, Colin N. Dewey
Software Mentions: 2
Published: almost 10 years ago
10.1093/gigascience/giz160
The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assembliesCited by: 38
Author(s): Weiwen Wang, Ashutosh Das, David Kainer, Miriam Schalamun, Alejandro Morales-Suarez, Benjamin Schwessinger, Robert Lanfear
Software Mentions: 2
Published: almost 5 years ago
10.1002/hbm.25272
A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sourcesCited by: 50
Author(s): Maria Carla Piastra, Andreas Nüßing, Johannes Vorwerk, Maureen Clerc, Christian Engwer, Carsten H. Wolters
Software Mentions: 2
Published: almost 4 years ago
10.1155/2011/923703
Forward Field Computation with OpenMEEGCited by: 89
Author(s): Alexandre Gramfort, Théodore Papadopoulo, Emmanuel Olivi, Maureen Clerc
Software Mentions: 2
Published: almost 14 years ago
10.1038/s41598-019-48252-8
Fine-grained simulations of the microenvironment of vascularized tumoursCited by: 6
Author(s): Thierry Fredrich, Heiko Rieger, Roberto Chignola, E. Milotti
Software Mentions: 1
Published: about 5 years ago
10.3390/s17102342
Model-Based Real-Time Non-Rigid TrackingCited by: 2
Author(s): Sebastián Bronte, Luis M. Bergasa, Daniel Pizarro, Rafael Barea
Software Mentions: 1
Published: about 7 years ago
10.1152/ajpheart.00130.2016
Impact of coronary bifurcation morphology on wave propagationCited by: 4
Author(s): Simone Rivolo, Lucas Hadjilucas, Matthew Sinclair, Pepijn van Horssen, Jeroen P. van den Wijngaard, Roman Wesołowski, Amedeo Chiribiri, Maria Siebes, Nicolas P. Smith, Jack Lee
Software Mentions: 1
Published: about 8 years ago
10.3390/s21020412
Mesh Denoising via Adaptive Consistent NeighborhoodCited by: 7
Author(s): Mingqiang Guo, Zhenzhen Song, Chengde Han, Zhong Su, Ruina Lv, Zheng Liu
Software Mentions: 1
Published: almost 4 years ago
10.3390/s21134279
A Saliency-Based Sparse Representation Method for Point Cloud SimplificationCited by: 9
Author(s): Esmeide Leal, Germán Sánchez-Torres, John William Branch Bedoya, Francisco Abad, Nallig Leal
Software Mentions: 1
Published: over 3 years ago
10.1016/j.softx.2020.100454
Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using MeshtoolCited by: 38
Author(s): Aurel Neic, Matthias A. F. Gsell, Elias Karabelas, Anton J. Prassl, Gernot Plank
Software Mentions: 1
Published: almost 5 years ago
10.1186/s40064-016-3447-z
Seamless images stitching for 3D human modelsCited by: 1
Author(s): Chao Lai, Fangzhao Li, Shiyao Jin
Software Mentions: 1
Published: about 8 years ago
10.3390/s20236916
Semantic Extraction of Permanent Structures for the Reconstruction of Building Interiors from Point CloudsCited by: 11
Author(s): Inge Coudron, Steven Puttemans, Toon Goedemé, Patrick Vandewalle
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12859-020-3382-4
Toward a more holistic method of genome assembly assessmentCited by: 18
Author(s): Adam Thrash, Federico G. Hoffmann, Andy D. Perkins
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2105-9-11
SeqAn An efficient, generic C++ library for sequence analysisCited by: 277
Author(s): Andreas Döring, David Weese, Tobias Rausch, Knut Reinert
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12864-018-5159-y
Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreusCited by: 19
Author(s): Byoung Won Min, Seunghwan Kim, Youn Lee Oh, Won Sik Kong, Hong-Jae Park, Hee-Jung Cho, Kab Yeul Jang, Jeong Gu Kim, In Geol Choi
Software Mentions: 1
Published: about 6 years ago
10.1186/s12880-017-0193-9
Analysis of the three-dimensional anatomical variance of the distal radius using 3D shape modelsCited by: 10
Author(s): Sebastian Felix Baumbach, Jakob Binder, Alexander Synek, Fabian Mück, Cheng Yan, Ekkehard Euler, Georg Langs, Lukas Fischer
Software Mentions: 1
Published: over 7 years ago
10.1186/1753-6561-8-S2-S4
VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservationCited by: 4
Author(s): Simonton Andrade Silveira, Alexandre Victor Fassio, Valdete Gonçalves-Almeida, Elisa Boari de Lima, Yussif Tadeu de Barcelos, Flávia Figueira Aburjaile, Laerte M. Rodrigues, Wagner Meira, Raquel Cardoso de Melo‐Minardi
Software Mentions: 1
Published: over 10 years ago
10.1093/bioinformatics/btu391
Evaluation and validation of<i>de novo</i>and hybrid assembly techniques to derive high-quality genome sequencesCited by: 97
Author(s): Sagar M. Utturkar, Dawn M. Klingeman, Miriam Land, Christopher W. Schadt, Mitchel J. Doktycz, Dale A. Pelletier, Steven D. Brown
Software Mentions: 1
Published: over 10 years ago
10.1007/s10237-015-0748-z
Estimation of passive and active properties in the human heart using 3D tagged MRICited by: 52
Author(s): Liya Asner, Myrianthi Hadjicharalambous, Radomír Chabiniok, Devis Peresutti, Eva Sammut, James Wong, Gerald Carr‐White, Phil Chowienczyk, Jack Lee, Andrew P. King, Nicolas P. Smith, Reza Razavi, David Nordsletten
Software Mentions: 1
Published: almost 9 years ago
10.1007/s10237-019-01204-7
A quantitative high-resolution computational mechanics cell model for growing and regenerating tissuesCited by: 31
Author(s): Paul Van Liedekerke, Johannes Neitsch, Tim Johann, Enrico Warmt, Ismael González-Valverde, Stefan Hoehme, Steffen Grosser, Josef Kaes, Dirk Drasdo
Software Mentions: 1
Published: almost 5 years ago
10.3390/brainsci9080179
Computational Modeling of the Photon Transport, Tissue Heating, and Cytochrome C Oxidase Absorption during Transcranial Near-Infrared StimulationCited by: 26
Author(s): Malay Bhattacharya, Anirban Dutta
Software Mentions: 1
Published: over 5 years ago
10.3390/ma14020427
A Numerical Study of Geometry’s Impact on the Thermal and Mechanical Properties of Periodic Surface StructuresCited by: 12
Author(s): Elżbieta Gawrońska, Robert Dyja
Software Mentions: 1
Published: almost 4 years ago
10.1097/MD.0000000000023330
Bringing prevost's sign into the third dimension: Artificial intelligence estimation of conjugate gaze adjusted length (CGAL) and correlation with acute ischemic strokeCited by: 1
Author(s): Hillel S. Maresky, Joseph M. Rootman, Miriam M. Klar, Max Levitt, Alexander P. Kossar, David M. Zucker, Michael Glazier, Shani Kalmanovich-Avnery, Richard I. Aviv, Birgit Ertl‐Wagner, Sigal Tal
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.mex.2015.02.004
Efficient Voronoi volume estimation for DEM simulations of granular materials under confined conditionsCited by: 8
Author(s): Göran Frenning
Software Mentions: 1
Published: almost 10 years ago
10.1016/j.mex.2020.101061
Method for generating high-quality tetrahedral meshes of geological models by utilizing CGALCited by: 7
Author(s): Bowen Wang, Gang Mei, Nengxiong Xu
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.mex.2021.101398
Geological surface reconstruction from 3D point cloudsCited by: 4
Author(s): Cristina Serazio, Marco Tamburini, Francesca Verga, Stefano Berrone
Software Mentions: 1
Published: almost 4 years ago
10.1038/msb.2013.43
Sequential induction of auxin efflux and influx carriers regulates lateral root emergenceCited by: 102
Author(s): Benjamin Péret, A. Middleton, A. P. French, Antoine Larrieu, Anthony Bishopp, Maria Njo, Darren M. Wells, Silvana Porco, Nathan Mellor, Leah R. Band, Ilda Casimiro, Jürgen Kleine‐Vehn, Steffen Vanneste, Ilkka Sairanen, Romain Mallet, Göran Sandberg, Karin Ljung, Tom Beeckman, Eva Benková, Jiřı́ Friml, Eric M. Kramer, John R. King, Ive De Smet, Tony Pridmore, Markus R. Owen, Malcolm J. Bennett
Software Mentions: 1
Published: almost 12 years ago
10.1186/s42492-019-0010-0
An efficient data structure for calculation of unstructured T-spline surfacesCited by: 5
Author(s): Wei Wang, Yang Zhang, Xiaoxiao Du, Gang Zhao
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.5156
Trabecular bone patterning in the hominoid distal femurCited by: 16
Author(s): Leoni Georgiou, Tracy L. Kivell, Dieter H. Pahr, Matthew M. Skinner
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pcbi.1005690
TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictionsCited by: 200
Author(s): Zixuan Cang, Guowei Wei
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0190666
Fast and robust shape diameter functionCited by: 3
Author(s): Shuangmin Chen, Taijun Liu, Zhenyu Shu, Shiqing Xin, Ying He, Changhe Tu
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0013942
Emergent Properties of Tumor Microenvironment in a Real-Life Model of Multicell Tumor SpheroidsCited by: 40
Author(s): E. Milotti, Roberto Chignola
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0149860
Preconditioning 2D Integer Data for Fast Convex Hull ComputationsCited by: 3
Author(s): Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0168916
Comparison of Safety Margin Generation Concepts in Image Guided Radiotherapy to Account for Daily Head and Neck Pose VariationsCited by: 5
Author(s): Markus Stoll, Eva Maria Stoiber, Sarah Grimm, Jürgen Debus, Rolf Bendl, Kristina Giske
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0059744
A general and Robust Ray-Casting-Based Algorithm for Triangulating Surfaces at the NanoscaleCited by: 96
Author(s): Sergio Decherchi, Walter Rocchia
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0120151
Surface Reconstruction through Poisson Disk SamplingCited by: 5
Author(s): Wenguang Hou, Zhenlin Xu, Nan-nan Qin, Dongping Xiong, Mingyue Ding
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0228119
A flexible workflow for simulating transcranial electric stimulation in healthy and lesioned brainsCited by: 6
Author(s): Benjamin Kalloch, Pierre‐Louis Bazin, Arno Villringer, Bernhard Sehm, Mario Hlawitschka
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0053609
Easy DNA Modeling and More with GraphiteLifeExplorerCited by: 30
Author(s): Samuel Hornus, Bruno Lévy, Damien Larivière, Eric Fourmentin
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0158912
Quantification of Diaphragm Mechanics in Pompe Disease Using Dynamic 3D MRICited by: 30
Author(s): Katja Mogalle, Adria Perez-Rovira, Pierluigi Ciet, Stephan C.A. Wens, Pieter A. van Doorn, Harm A.W.M. Tiddens, Ans T. van der Ploeg, Marleen de Bruijne
Software Mentions: 1
Published: over 8 years ago
10.1186/s12987-019-0126-9
Analysis of convective and diffusive transport in the brain interstitiumCited by: 100
Author(s): Lori Ray, Jeffrey J. Iliff, Jeffrey J. Heys
Software Mentions: 1
Published: over 5 years ago
10.3389/fphys.2018.01938
The Impact of Left Atrium Appendage Morphology on Stroke Risk Assessment in Atrial Fibrillation: A Computational Fluid Dynamics StudyCited by: 58
Author(s): Alessandro Masci, Lorenzo Barone, Luca Dedè, Marco Fedele, Corrado Tomasi, Alfio Quarteroni, Cristiana Corsi
Software Mentions: 1
Published: almost 6 years ago
10.3389/fphys.2018.01832
Fibrosis Microstructure Modulates Reentry in Non-ischemic Dilated Cardiomyopathy: Insights From Imaged Guided 2D Computational ModelingCited by: 20
Author(s): Gabriel Balaban, Brian P Halliday, Caroline Mendonça Costa, Wenjia Bai, Bradley Porter, Christopher Aldo Rinaldi, Gernot Plank, Daniel Rueckert, Sanjay Prasad, Martin J. Bishop
Software Mentions: 1
Published: almost 6 years ago
10.1186/gb-2013-14-1-r8
CGAL: computing genome assembly likelihoodsCited by: 82
Author(s): Atif Rahman, Lior Pachter
Software Mentions: 1
Published: almost 12 years ago
10.1186/gb-2013-14-5-r47
REAPR: a universal tool for genome assembly evaluationCited by: 373
Author(s): Martin Hunt, Taisei Kikuchi, Mandy Sanders, Chris Newbold, Matthew Berriman, Thomas D. Otto
Software Mentions: 1
Published: almost 12 years ago
10.1109/TBME.2020.2976924
3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic CardiomyopathyCited by: 6
Author(s): Gabriel Balaban, Caroline Mendonça Costa, Bradley Porter, Brian P Halliday, Christopher A. Rinaldi, Sanjay Prasad, Gernot Plank, Tevfik F Ismail, Martin J. Bishop
Software Mentions: 1
Published: about 4 years ago
10.1098/rsfs.2015.0083
Multiphysics and multiscale modelling, data–model fusion and integration of organ physiology in the clinic: ventricular cardiac mechanicsCited by: 170
Author(s): Radomír Chabiniok, Vicky Y. Wang, Myrianthi Hadjicharalambous, Liya Asner, Jack Lee, Maxime Sermesant, Ellen Kuhl, Alistair A. Young, Philippe Moireau, Martyn P. Nash, Dominique Chapelle, David Nordsletten
Software Mentions: 1
Published: over 8 years ago
10.1016/j.jbiomech.2020.109645
Simulating ventricular systolic motion in a four-chamber heart model with spatially varying robin boundary conditions to model the effect of the pericardiumCited by: 55
Author(s): Marina Strocchi, Matthias A. F. Gsell, Christoph M. Augustin, Orod Razeghi, Caroline H. Roney, Anton J. Prassl, Edward J. Vigmond, Jonathan M. Behar, Justin Gould, Christopher Aldo Rinaldi, Martin J. Bishop, Gernot Plank, Steven Niederer
Software Mentions: 1
Published: over 4 years ago
10.1186/s12968-015-0147-8
Single breath-hold 3D measurement of left atrial volume using compressed sensing cardiovascular magnetic resonance and a non-model-based reconstruction approachCited by: 21
Author(s): Orestis Vardoulis, Pierre Monney, Amit H. Bermano, Amir Vaxman, Craig Gotsman, Janine Schwitter, Matthias Stuber, Nikolaos Stergiopulos, Juerg Schwitter
Software Mentions: 1
Published: over 9 years ago
10.1186/1477-5956-9-S1-S1
Prediction of DNA-binding protein based on statistical and geometric features and support vector machinesCited by: 20
Author(s): Weiqiang Zhou, Hong Yan
Software Mentions: 1
Published: almost 14 years ago
10.1038/s41598-019-45343-4
The role of three-dimensionality and alveolar pressure in the distribution and amplification of alveolar stressesCited by: 21
Author(s): Mauricio A. Sarabia‐Vallejos, Matías A. Zúñiga, Daniel E. Hurtado
Software Mentions: 1
Published: over 5 years ago