Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/mec.15120

https://doi.org/10.1111/mec.15120

Lineage specific histories of <i>Mycobacterium tuberculosis</i> dispersal in Africa and Eurasia

Cited by: 69
Author(s): Mary O’Neill, Abigail C. Shockey, Alex Zarley, William Aylward, Vegard Eldholm, Andrew Kitchen, Caitlin S. Pepperell
Published: over 5 years ago

Software Mentions 9

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: poppr
Genetic Analysis of Populations with Mixed Reproduction
Papers that mentioned: 251
cran: rworldmap
Mapping Global Data
Papers that mentioned: 86
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: EggLib
EggLib is software package offering a wide array of tools for automated population genetics and genomics analyses.
Papers that mentioned: 17
pypi: house
A lib to persist blobs by their sha256
Papers that mentioned: 960