Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: flowMeans

https://packages.ecosyste.ms/registries/bioconductor.org/packages/flowMeans

Non-parametric Flow Cytometry Data Gating
1 version
Latest release: 10 months ago
2 dependent packages
42,420 downloads total

Papers Mentioning flowMeans 17

10.1186/s12859-019-3152-3

flowEMMi: an automated model-based clustering tool for microbial cytometric data
Cited by: 16
Author(s): Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler, Susann Müller
Software Mentions: 18
Published: over 4 years ago

10.3389/fonc.2016.00188

Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry Samples
Cited by: 12
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 10
Published: almost 8 years ago

10.1186/s12859-020-03795-w

optimalFlow: optimal transport approach to flow cytometry gating and population matching
Cited by: 11
Author(s): Eustasio del Barrio, Hristo Inouzhe, Jean-Michel Loubès, Carlos Matrán, Agustín Mayo-Íscar
Software Mentions: 10
Published: almost 4 years ago

10.3390/vaccines8010138

From Bivariate to Multivariate Analysis of Cytometric Data: Overview of Computational Methods and Their Application in Vaccination Studies
Cited by: 12
Author(s): Simone Lucchesi, Simone Furini, Donata Medaglini, Annalisa Ciabattini
Software Mentions: 9
Published: over 4 years ago

10.1186/s12859-021-04125-4

Censcyt: censored covariates in differential abundance analysis in cytometry
Cited by: 0
Author(s): Reto Gerber, Mark D. Robinson
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pcbi.1003365

Flow Cytometry Bioinformatics
Cited by: 85
Author(s): Kieran O’Neill, Nima Aghaeepour, Josef Špidlen, Ryan R. Brinkman
Software Mentions: 7
Published: over 10 years ago

10.1186/1751-0473-8-14

GenePattern flow cytometry suite
Cited by: 16
Author(s): Josef Špidlen, Aaron Barsky, Karin Breuer, Peter A. Carr, Marc‐Danie Nazaire, Barbara Hill, Qian Yu, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick‐Pierre Sékaly, Ryan R. Brinkman
Software Mentions: 5
Published: about 11 years ago

10.1186/s12920-016-0201-x

Single and multi-subject clustering of flow cytometry data for cell-type identification and anomaly detection
Cited by: 7
Author(s): Maziyar Baran Pouyan, Vasu Jindal, Javad Birjandtalab, Mehrdad Nourani
Software Mentions: 5
Published: almost 8 years ago

10.3389/fimmu.2015.00380

An Introduction to Automated Flow Cytometry Gating Tools and Their Implementation
Cited by: 56
Author(s): Chris P. Verschoor, Alina Lelic, Jonathan L. Bramson, Dawn M. E. Bowdish
Software Mentions: 5
Published: about 9 years ago

10.1186/s13059-019-1917-7

A comparison framework and guideline of clustering methods for mass cytometry data
Cited by: 71
Author(s): Xiao Liu, Weichen Song, Brandon Wong, Ting Zhang, Shunying Yu, Guan Ning Lin, Yiyang Li
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-019-3294-3

Model-based cell clustering and population tracking for time-series flow cytometry data
Cited by: 9
Author(s): Kodai Minoura, Kayoko Abe, Yuka Maeda, Hiroyoshi Nishikawa, Teppei Shimamura
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2105-15-314

A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects
Cited by: 36
Author(s): Murat Dündar, Ferit Akova, Halid Ziya Yerebakan, Bartek Rajwa
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pcbi.1005875

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks
Cited by: 7
Author(s): Ye Henry Li, Dangna Li, Nikolay Samusik, Xiaowei Wang, Leying Guan, Garry P. Nolan, Wing Hung Wong
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-015-0862-z

BayesFlow: latent modeling of flow cytometry cell populations
Cited by: 22
Author(s): Kerstin Johnsson, Jonas Wallin, Magnus Fontes
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0137635

Multidimensional Clusters of CD4+ T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection
Cited by: 9
Author(s): Juliet Frederiksen, Marcus Buggert, Kajsa Noyan, Piotr Nowak, Anders Sönnerborg, Ole Lund, Annika C. Karlsson
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0065485

Integration of Lyoplate Based Flow Cytometry and Computational Analysis for Standardized Immunological Biomarker Discovery
Cited by: 16
Author(s): Federica Villanova, Paola Di Meglio, Margaret Inokuma, Nima Aghaeepour, Esperanza Perucha, Jennifer Mollon, Laurel Nomura, Maria P. Hernandez-Fuentes, Andrew P. Cope, A. Toby Prevost, Susanne Heck, Vernon C. Maino, Graham M. Lord, Ryan R. Brinkman, Frank O. Nestle
Software Mentions: 1
Published: about 11 years ago

10.3389/fimmu.2012.00302

Advances in Human B Cell Phenotypic Profiling
Cited by: 210
Author(s): Denise A. Kaminski, Chungwen Wei, Qian Yu, Alexander F. Rosenberg, Igñacio Sanz
Software Mentions: 1
Published: over 12 years ago