Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: SPLINTER
https://packages.ecosyste.ms/registries/bioconductor.org/packages/SPLINTER
Splice Interpreter of Transcripts
1 version
Latest release: 10 months ago
8,902 downloads total
Papers Mentioning SPLINTER 16
10.1016/j.csbj.2018.01.003
A review of somatic single nucleotide variant calling algorithms for next-generation sequencing dataCited by: 184
Author(s): Chang Xu
Software Mentions: 9
Published: over 6 years ago
10.7554/eLife.59654
HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitnessCited by: 19
Author(s): Jessica Sy Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Tommaso Tabaglio, Jingxian Zhang, Heike Wollmann, Leilei Chen, Ömer An, Tim Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen Mann, Eva Hernando, David J. Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 7
Published: about 3 years ago
10.1186/1471-2164-13-683
Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexingCited by: 24
Author(s): Enrique Ramos, Benjamin T. Levinson, Sara E. Chasnoff, Andrew Hughes, Andrew L. Young, Katherine A. Thornton, Allie Li, Francesco Vallania, Michael Province, Todd E. Druley
Software Mentions: 7
Published: over 11 years ago
10.1371/journal.pone.0078032
Fine-Mapping an Association of FSHR with Preterm Birth in a Finnish PopulationCited by: 16
Author(s): Sung Chun, Jevon Plunkett, Kari Teramo, Louis J. Muglia, Justin C. Fay
Software Mentions: 3
Published: over 10 years ago
10.1186/gb-2012-13-5-r34
A new approach for detecting low-level mutations in next-generation sequence dataCited by: 87
Author(s): Mingkun Li, Mark Stoneking
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0189056
A backwards glance at words: Using reversed-interior masked primes to test models of visual word identificationCited by: 6
Author(s): Colin J. Davis, Stephen J. Lupker
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2164-15-244
Comparison of somatic mutation calling methods in amplicon and whole exome sequence dataCited by: 132
Author(s): Huilei Xu, John DiCarlo, Ravi Vijaya Satya, Peng Quan, Yexun Wang
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0142649
Pooled Sequencing of Candidate Genes Implicates Rare Variants in the Development of Asthma Following Severe RSV Bronchiolitis in InfancyCited by: 9
Author(s): Dara G. Torgerson, Tusar Giri, Todd E. Druley, Jie Zheng, Scott Huntsman, Max A. Seibold, Andrew L. Young, Toni Schweiger, Huiqing Yin‐Declue, Geneline Sajol, Kenneth B. Schechtman, Ryan D. Hernández, Adrienne G. Randolph, Leonard B. Bacharier, Mario Castro
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0041356
Synthetic Spike-in Standards Improve Run-Specific Systematic Error Analysis for DNA and RNA SequencingCited by: 52
Author(s): Justin M. Zook, Daniel V. Samarov, Jennifer McDaniel, Shurjo K. Sen, Marc Salit
Software Mentions: 1
Published: almost 12 years ago
10.1186/1756-0500-6-206
RVD: a command-line program for ultrasensitive rare single nucleotide variant detection using targeted next-generation DNA resequencingCited by: 6
Author(s): Anna Cushing, Patrick Flaherty, Erik Hopmans, John Bell, Hanlee P. Ji
Software Mentions: 1
Published: about 11 years ago
10.1136/bmjresp-2014-000057
Sequencing of idiopathic pulmonary fibrosis-related genes reveals independent single gene associationsCited by: 67
Author(s): Meghan A Coghlan, Adrián Shifren, Howard J. Huang, Tonya Russell, Robi D. Mitra, Qunyuan Zhang, Daniel Wegner, F. Sessions Cole, Aaron Hamvas
Software Mentions: 1
Published: over 9 years ago
10.1186/s13024-016-0097-0
Resequencing analysis of five Mendelian genes and the top genes from genome-wide association studies in Parkinson’s DiseaseCited by: 57
Author(s): Bruno A. Benitez, Albert A. Davis, Sheng Chih Jin, Laura Ibáñez, Sara Ortega‐Cubero, Pau Pástor, Jiyoon Choi, Barry Cooper, Joel S. Perlmutter, Carlos Cruchaga
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pgen.1003685
The PSEN1, p.E318G Variant Increases the Risk of Alzheimer's Disease in APOE-ε4 CarriersCited by: 56
Author(s): Bruno A. Benitez, Celeste M. Karch, Yefei Cai, Sheng Chih Jin, Barry Cooper, David Carrell, Sarah Bertelsen, Lori B. Chibnik, Julie A. Schneider, David A. Bennett, Alzheimer’s Disease Neuroimaging Initiative, Genetic, Anne M. Fagan, David M. Holtzman, John C. Morris, Alison M. Goate, Carlos Cruchaga
Software Mentions: 1
Published: almost 11 years ago
10.1186/alzrt137
Pooled-DNA sequencing identifies novel causative variants in PSEN1, GRN and MAPT in a clinical early-onset and familial Alzheimer's disease Ibero-American cohortCited by: 88
Author(s): Sheng Chih Jin, Pau Pástor, Barry Cooper, Sebastián Cervantes, Bruno A. Benitez, Cristina Razquín, Alison M. Goate, Carlos Cruchaga
Software Mentions: 1
Published: over 12 years ago
10.3389/fnins.2018.00230
Pleiotropic Effects of Variants in Dementia Genes in Parkinson DiseaseCited by: 19
Author(s): Laura Ibáñez, Umber Dube, Albert A. Davis, María Victoria Fernández, John Budde, Barry Cooper, Mónica Díez-Fairén, Sara Ortega‐Cubero, Pau Pástor, Joel S. Perlmutter, Carlos Cruchaga, Bruno A. Benitez
Software Mentions: 1
Published: over 6 years ago
10.1186/gb-2011-12-9-r93
Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysisCited by: 8
Author(s): Tejasvi Niranjan, Abby Adamczyk, Héctor Corrada Bravo, Margaret A. Taub, Sarah J. Wheelan, Rafael A. Irizarry, Tao Wang
Software Mentions: 1
Published: over 13 years ago