Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: snapCGH

https://packages.ecosyste.ms/registries/bioconductor.org/packages/snapCGH

Segmentation, normalisation and processing of aCGH data
1 version
Latest release: about 1 year ago
2 dependent packages
39,744 downloads total

Papers Mentioning snapCGH 16

10.1155/2009/201325

Analysis of Array-CGH Data Using the R and Bioconductor Software Suite
Cited by: 8
Author(s): Winfried Hofmann, Anja Weigmann, Marcel Tauscher, Britta Skawran, Tim Focken, R Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann
Software Mentions: 11
Published: almost 16 years ago

10.1155/2014/910390

<i>biomvRhsmm:</i>Genomic Segmentation with Hidden Semi-Markov Model
Cited by: 4
Author(s): Yang Du, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 10
Published: almost 11 years ago

10.1155/2012/876976

A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation Data
Cited by: 1
Author(s): Ian Roberts, Stephanie A. Carter, Cinzia G. Scarpini, Konstantina Karagavriilidou, Jenny Barna, M. Calleja, Nicholas Coleman
Software Mentions: 7
Published: over 12 years ago

10.1186/s12859-018-2140-3

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data
Cited by: 9
Author(s): Senthil Balaji Girimurugan, Yuhang Liu, Pei-Yau Lung, Daniel Vera, Jane A Dennis, Hank W. Bass, Jinfeng Zhang
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0014077

Analyses of Copy Number Variation of GK Rat Reveal New Putative Type 2 Diabetes Susceptibility Loci
Cited by: 10
Author(s): Zhiqiang Ye, Shen Niu, Yang Yu, Hui Yu, Bao Hong Liu, Rong Xia Li, Hua Xiao, Rong Zeng, Yi Xue Li, Jia Wu, Yuan Yuan Li
Software Mentions: 5
Published: about 14 years ago

10.1186/1471-2105-8-145

A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array
Cited by: 24
Author(s): Tianwei Yu, Hui Ye, Wei Sun, Ker Chau Li, Zugen Chen, Sharoni Jacobs, Dione K. Bailey, David T. Wong, Xiaofeng Zhou
Software Mentions: 5
Published: over 17 years ago

10.1186/1471-2164-11-441

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties
Cited by: 80
Author(s): Marika Vitikainen, Mikko Arvas, Tiina Pakula, Merja Oja, Merja Penttilä, Markku Saloheimo
Software Mentions: 4
Published: almost 15 years ago

10.1371/journal.pone.0003916

A Snapshot of CNVs in the Pig Genome
Cited by: 110
Author(s): João Fadista, Marianne Nygaard, Lars‐Erik Holm, Bo Thomsen, Christian Berthou
Software Mentions: 4
Published: about 16 years ago

10.2174/138920209787581244

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data
Cited by: 2
Author(s): Simon Lin, Pan Du, Nadereh Jafari, Toru Ouchi
Software Mentions: 4
Published: almost 16 years ago

10.15252/msb.20167159

Recurrent patterns of DNA copy number alterations in tumors reflect metabolic selection pressures
Cited by: 60
Author(s): Nicholas A. Graham, Aspram Minasyan, Anastasia Lomova, Ashley Cass, Nikolas G. Balanis, Michael Friedman, Shawna T. Chan, Sophie R. Zhao, Adrián Delgado, James Go, L. P. Beck, Christian Hurtz, Carina Ng, Rong Qiao, Johanna ten Hoeve, Nicolaos Palaskas, Hong Wu, Markus Müschen, Asha S. Multani, Elisa Port, Steven M. Larson, Nikolaus Schultz, Daniel Braas, Heather R. Christofk, Ingo K. Mellinghoff, Thomas G. Graeber
Software Mentions: 3
Published: almost 8 years ago

10.1186/gb-2011-12-8-r80

Single-cell copy number variation detection
Cited by: 37
Author(s): Jun‐Hu Cheng, Evelyne Vanneste, Peter Könings, Thierry Voet, Joris Robert Vermeesch, Yves Moreau
Software Mentions: 3
Published: almost 14 years ago

10.18632/oncotarget.22804

Gene amplification in mesenchymal stem cells and during differentiation towards adipocytes or osteoblasts
Cited by: 7
Author(s): Nora Corinna Altmayer, Valentina Galata, Nadine Warschburger, Andreas Keller, Eckart Meese, Ulrike Fischer
Software Mentions: 3
Published: about 7 years ago

10.1186/gb-2007-8-10-r228

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
Cited by: 131
Author(s): John C. Marioni, Natalie Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, T. Daniel Andrews, Barbara Elaine Stranger, Andy G. Lynch, Emmanouil T. Dermitzakis, Nigel P. Carter, Simon Tavaré, Matthew E. Hurles
Software Mentions: 2
Published: almost 18 years ago

10.1155/2015/194624

aCGH-MAS: Analysis of aCGH by means of Multiagent System
Cited by: 1
Author(s): Juan F. De Paz, Rocío Benito, Javier Bajo, Ana E. Rodríguez, María Abáigar
Software Mentions: 2
Published: almost 10 years ago

10.1038/onc.2016.507

KLF6 depletion promotes NF-κB signaling in glioblastoma
Cited by: 25
Author(s): Anie P. Masilamani, Roberto Ferrarese, Eva Kling, Nanda K. Thudi, Hoon Kim, Denise M. Scholtens, Fangping Dai, Michael Hadler, Thomas Unterkircher, Leonardo Platania, Astrid Weyerbrock, Marco Prinz, G. Yancey Gillespie, Griffith R. Harsh, Markus Bredel, Maria Stella Carro
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13072-018-0196-y

DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis
Cited by: 7
Author(s): Marco La Fortezza, Giovanna Grigolon, Andrea Cosolo, Alexey V. Pindyurin, Laura Breimann, Helmut Blum, Bas van Steensel, Anne-Kathrin Classen
Software Mentions: 1
Published: over 6 years ago