Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: TCseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/TCseq

Time course sequencing data analysis
1 version
Latest release: about 1 year ago
13,923 downloads total

Papers Mentioning TCseq 17

Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to Its Key Ingredient Berberine
Cited by: 59
Author(s): Xizhan Xu, Zezheng Gao, Fuchao Yang, Yingying Yang, Liang Chen, Han Chieh Lin, Na Zhao, Jiayue Xu, Xinmiao Wang, Yue Ma, Lian Shu, Xueyou Hu, Na Lyu, Yuanlong Pan, Baoli Zhu, Linhua Zhao, Xiaolin Tong, Jun Wang
Software Mentions: 8
Published: almost 4 years ago

10.3389/fpls.2021.619062

Genome-Wide Identification and Characterization of Potato Long Non-coding RNAs Associated With Phytophthora infestans Resistance
Cited by: 5
Author(s): Weilin Cao, Li‐Ming Gan, Chenchen Wang, Xuan Zhao, Mingyu Zhang, Jinyan Du, Shumei Zhou, Changxiang Zhu
Software Mentions: 6
Published: almost 4 years ago

10.3390/genes10070514

Transcriptional Analysis of the Early Ripening of ‘Kyoho’ Grape in Response to the Treatment of Riboflavin
Cited by: 9
Author(s): Zhenguang Wang, Lili Guo, Xiao-Ru Ji, Yi‐He Yu, Guohai Zhang, Da‐Long Guo
Software Mentions: 6
Published: over 5 years ago

10.1186/s12870-020-02702-y

Alternative splicing profiling provides insights into the molecular mechanisms of peanut peg development
Cited by: 3
Author(s): Xiaobo Zhao, Chunjuan Li, Hao Zhang, Yan Cheng, Quanxi Sun, Juan Wang, Cuiling Yuan, Shiguang Shan
Software Mentions: 5
Published: about 4 years ago

10.1002/pld3.320

High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in <i>Arabidopsis thaliana</i>
Cited by: 5
Author(s): Wei Xiong, Jiancong Zhang, Ting Lan, Wenwen Kong, Xiaoyan Wang, Lin Liu, Xuemei Chen, Beixin Mo
Software Mentions: 5
Published: over 3 years ago

10.1186/s12870-021-03042-1

Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
Cited by: 12
Author(s): Hongcheng Fang, Xia Liu, Yixin Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jianning Liu, Ke Yang
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-019-6204-1

Transcriptome profiling of ‘Kyoho’ grape at different stages of berry development following 5-azaC treatment
Cited by: 7
Author(s): Da‐Long Guo, Qiong Li, Xiao-Ru Ji, Zhenguang Wang, Yi‐He Yu
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.61531

HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration
Cited by: 6
Author(s): Alicia Tapias, David Rodríguez Lázaro, Bo-Kun Yin, Seyed Mohammad Mahdi Rasa, Anna Krepelova, Erika Kelmer Sacramento, Paulius Grigaravičius, Philipp Koch, Joanna Kirkpatrick, Alessandro Ori, Francesco Neri, Zhaoqi Wang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12870-019-1968-7

Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe
Cited by: 40
Author(s): Shouli Feng, Min Xu, Fujie Liu, Changjiang Cui, Baoliang Zhou
Software Mentions: 4
Published: over 5 years ago

10.1084/jem.20181505

Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation
Cited by: 54
Author(s): Ziyang Chen, Elias Amro, F Becker, Martin Hölzer, Seyed Mohammad Mahdi Rasa, Sospeter Ngoci Njeru, Bing Han, Simone Di Sanzo, Yulin Chen, Duozhuang Tang, Ting Si, Ronny Haenold, Marco Groth, Victor Romanov, Joanna Kirkpatrick, Johann M. Kraus, Hans A. Kestler, Manja Marz, Alessandro Ori, Francesco Neri, Yohei Morita, K. Lenhard Rudolph
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms19113525

Comparative Transcriptome Analysis Provides Novel Insight into Morphologic and Metabolic Changes in the Fat Body during Silkworm Metamorphosis
Cited by: 15
Author(s): Jian Peng, Zheng Li, Yan Yang, Peng Wang, Xuan Zhou, Tujing Zhao, Mengpei Guo, Meng Meng, Tianlei Zhang, Wenliang Qian, Qingyou Xia, Daojun Cheng, Ping Zhao
Software Mentions: 2
Published: about 6 years ago

10.1186/s12890-020-01316-2

A bioinformatics analysis to identify novel biomarkers for prognosis of pulmonary tuberculosis
Cited by: 7
Author(s): Yahong Sun, Gang Chen, Zhihao Liu, Lei Yu, Shang Yan
Software Mentions: 2
Published: about 4 years ago

10.1016/j.cell.2021.02.050

An early cell shape transition drives evolutionary expansion of the human forebrain
Cited by: 114
Author(s): Silvia Benito-Kwiecinski, Stefano L. Giandomenico, Magdalena Sutcliffe, Erlend S. Riis, Paula Freire-Pritchett, Iva Kelava, Stephanie Wunderlich, Ulrich Martin, Gregory A. Wray, Katie McDole, Madeline A. Lancaster
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 3 years ago

10.1038/s41422-019-0216-x

Sodium oligomannate therapeutically remodels gut microbiota and suppresses gut bacterial amino acids-shaped neuroinflammation to inhibit Alzheimer’s disease progression
Cited by: 628
Author(s): Xinyi Wang, Guangqiang Sun, Teng Feng, Jing Zhang, Xun Huang, Tao Wang, Zuoquan Xie, Xingkun Chu, Jun Yang, Huan Wang, Shuaishuai Chang, Yanxue Gong, Lingfei Ruan, Guanqun Zhang, Siyuan Yan, Li-Li Wen, Chen Du, Da Yang, Qingli Zhang, Feifei Lin, Jia Liu, Haiyan Zhang, Changrong Ge, Shifu Xiao, Jian Ding, Meiyu Geng
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2021.646730

X-Ray Causes mRNA Transcripts Change to Enhance Orai2-Mediated Ca2+ Influx in Rat Brain Microvascular Endothelial Cells
Cited by: 4
Author(s): Fangfang Xu, Wang Yang, Huiwen Gao, Xinchen Zhang, Yu Hu, Tae-Ho Han, Bing Shen, Lesha Zhang, Qibing Wu
Software Mentions: 1
Published: about 3 years ago

10.3390/plants10061127

Combined Proteomic and Physiological Analysis of Chloroplasts Reveals Drought and Recovery Response Mechanisms in Nicotiana benthamiana
Cited by: 3
Author(s): Silin Chen, Ping Li, Shun-Ling Tan, Xiaojun Pu, Ying Zhou, Keming Hu, Wei Huang, Li Liu
Software Mentions: 1
Published: over 3 years ago